OCplus 1.12.0
Alexander Ploner
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/OCplus | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/OCplus.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
plot.FDR.result
S3 methods shown with full name in documentation object 'plot.fdr1d.result':
plot.fdr1d.result
S3 methods shown with full name in documentation object 'plot.fdr2d.result':
plot.fdr2d.result
S3 methods shown with full name in documentation object 'summary.fdr.result':
summary.fdr.result
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating OCplus-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating OCplus-manual.tex ... OK
* checking OCplus-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/OCplus.Rcheck
---------- Making package OCplus ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing man source files
installing indices
installing help
Note: unmatched right brace in 'plot.fdr2d.result' on or after line 43
Note: unmatched right brace in 'plot.fdr2d.result.Rd' on or after line 43
>>> Building/Updating help pages for package 'OCplus'
Formats: text html latex example chm
DrawContourlines text html latex chm
EOC text html latex example chm
FDR text html latex example chm
MAsim.smyth text html latex example chm
OCshow text html latex example chm
TOC text html latex example chm
Undocumented text html latex chm
average.fdr text html latex example chm
fdr1d text html latex example chm
fdr2d text html latex example chm
plot.FDR.result text html latex example chm
plot.fdr1d.result text html latex example chm
plot.fdr2d.result text html latex example chm
samplesize text html latex example chm
smooth1d text html latex example chm
summary.fdr.result text html latex example chm
tMixture text html latex example chm
tstatistics text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "s\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\OCplus.Rcheck\00_pkg_src\OCplus\chm\OCplus.chm
HHC4016: Warning: Cannot open "s\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package OCplus for lazy loading
Loading required package: akima
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
adding MD5 sums
* DONE (OCplus)