ABarray 1.6.0
Yongming Andrew Sun
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ABarray | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/ABarray.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'ABarray/DESCRIPTION' ... OK
* this is package 'ABarray' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ABarray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ABarray: no visible binding for global variable 'colSn'
ABarrayGUI : getImputeFunc: no visible binding for global variable
'knnRbtn'
getPantherMap: no visible binding for global variable 'panther'
Found possibly global 'T' or 'F' in the following functions:
ABarray ABarrayGUI calcsn concord cvv cvvPlot doANOVA doLPE
doPlotEset doPlotFCT hclusterPlot icpPlot imputeFlag mamaplot
mvaPair2 qnNormalize snSummary
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ABarray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ABarray-manual.tex ... OK
* checking ABarray-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/ABarray.Rcheck
---------- Making package ABarray ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'ABarray'
Formats: text html latex example chm
ABarray text html latex example chm
ABarrayGUI text html latex example chm
calcsn text html latex example chm
concord text html latex example chm
cvv text html latex example chm
cvvPlot text html latex example chm
doANOVA text html latex example chm
doLPE text html latex example chm
doPlotEset text html latex example chm
doPlotFCT text html latex example chm
doVennDiagram text html latex example chm
drawVennDiagram text html latex example chm
getMemberEset text html latex example chm
getPantherMap text html latex example chm
hclusterPlot text html latex example chm
icpPlot text html latex example chm
imputeFlag text html latex example chm
lpe.fdr.BH text html latex example chm
mamaplot text html latex example chm
matrixPlot text html latex example chm
mvaPair2 text html latex example chm
panel.cor text html latex example chm
panel.scatter text html latex example chm
qnNormalize text html latex example chm
rgcolorsfunc text html latex example chm
savejpg text html latex example chm
scaleColorBar text html latex example chm
snSummary text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\ABarray.Rcheck\00_pkg_src\ABarray\chm\ABarray.chm
HHC4016: Warning: Cannot open "Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package ABarray for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: tcltk
Loading Tcl/Tk interface ... done
adding MD5 sums
* DONE (ABarray)