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Package 229/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
vsn 3.2.1 Wolfgang Huber Last Changed Date: 2007-10-03 05:46:44 -0700 Last Changed Rev: 27722 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: vsn |
Version: 3.2.1 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check vsn_3.2.1.tar.gz |
RetCode: 0 |
Time: 176.3 seconds |
Status: OK |
CheckDir: vsn.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/vsn.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'vsn/DESCRIPTION' ... OK * this is package 'vsn' version '3.2.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'vsn' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating vsn-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating vsn-manual.tex ... OK * checking vsn-manual.tex ... OK
vsn.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/vsn.Rcheck ---------- Making package vsn ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making init.d from init.c making vsn.d from vsn.c making vsn2.d from vsn2.c gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c init.c -o init.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c vsn.c -o vsn.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c vsn2.c -o vsn2.o windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i vsn_res.rc -o vsn_res.o gcc-sjlj -std=gnu99 -shared -s -o vsn.dll vsn.def init.o vsn.o vsn2.o vsn_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'vsn' Formats: text html latex example chm class.vsn text html latex example chm class.vsnInput text html latex example chm getIntensityMatrix text html latex example chm justvsn text html latex example chm kidney text html latex example chm lymphoma text html latex example chm meanSdPlot text html latex example chm normalize.AffyBatch.vsn text html latex example chm sagmbSimulateData text html latex example chm scalingFactorTransformation text html latex example chm vsn-package text html latex chm vsn text html latex example chm vsn2 text html latex example chm vsn2trsf text html latex example chm vsnLikelihood text html latex example chm vsnPlotPar text html latex example chm vsnh text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm Compile time: 0 minutes, 0 seconds 18 Topics 134 Local links 14 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm, 53,036 bytes Compression decreased file by 42,755 bytes. preparing package vsn for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: limma Creating a new generic function for "logLik" in "vsn" Creating a new generic function for "coef" in "vsn" Creating a new generic function for "coefficients" in "vsn" adding MD5 sums * DONE (vsn)