Package: simpleaffy

Version: 2.14.01

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build simpleaffy

RetCode: 0

Time: 21.1 seconds

Status: OK

PackageFile: simpleaffy_2.14.01.tar.gz

* checking for file 'simpleaffy/DESCRIPTION' ... OK
* preparing 'simpleaffy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'simpleaffy' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c simpleaffy.c -o simpleaffy.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
** help
 >>> Building/Updating help pages for package 'simpleaffy'
     Formats: text html latex example 
  PairComp-class                    text    html    latex
  QCStats-class                     text    html    latex
  all.present                       text    html    latex   example
  all.present.in.group              text    html    latex   example
  bg.correct.sa                     text    html    latex   example
  call.exprs                        text    html    latex   example
  detection.p.val                   text    html    latex   example
  get.annotation                    text    html    latex   example
  get.array.indices                 text    html    latex   example
  get.array.subset                  text    html    latex   example
  get.array.subset.affy             text    html    latex   example
  get.fold.change.and.t.test        text    html    latex   example
  hmap.colors                       text    html    latex   example
  hmap.eset                         text    html    latex   example
  hmap.pc                           text    html    latex   example
  journalpng                        text    html    latex   example
  justMAS                           text    html    latex   example
  pairwise.comparison               text    html    latex   example
  pairwise.filter                   text    html    latex   example
  plot.pairwise.comparison          text    html    latex   example
  plot.qc.stats                     text    html    latex   example
  qc                                text    html    latex   example
  qc.affy                           text    html    latex   example
  qc.get.alpha1                     text    html    latex   example
  qc.get.array                      text    html    latex   example
  qc.get.probes                     text    html    latex   example
  qc.get.ratios                     text    html    latex   example
  qc.get.spikes                     text    html    latex   example
  qc.have.params                    text    html    latex   example
  qc.ok                             text    html    latex   example
  qc.read.file                      text    html    latex   example
  qc.stats                          text    html    latex   example
  read.affy                         text    html    latex   example
  read.affy.mixed                   text    html    latex   example
  setQCEnvironment                  text    html    latex   example
  simpleaffy-deprecated             text    html    latex   example
  standard.pearson                  text    html    latex   example
  trad.scatter.plot                 text    html    latex   example
** building package indices ...
* DONE (simpleaffy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simpleaffy_2.14.01.tar.gz'