Package: macat

Version: 1.12.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check macat_1.12.0.tar.gz

RetCode: 0

Time: 182.8 seconds

Status: OK

CheckDir: macat.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/macat.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'macat/DESCRIPTION' ... OK
* this is package 'macat' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'macat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating macat-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating macat-manual.tex ... OK
* checking macat-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/macat.Rcheck


---------- Making package macat ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing demos
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'macat'
     Formats: text html latex example chm 
  buildMACAT                        text    html    latex   example chm
  compute.sliding                   text    html    latex   example chm
  discreteKernelize                 text    html    latex   example chm
  discretize                        text    html    latex           chm
  discretize.tscores                text    html    latex   example chm
  discretizeAll                     text    html    latex   example chm
  evalScoring                       text    html    latex   example chm
  evaluateParameters                text    html    latex   example chm
  get.results                       text    html    latex   example chm
  html                              text    html    latex           chm
  kernelize                         text    html    latex   example chm
  kernelizeAll                      text    html    latex   example chm
  kernelizeToPython                 text    html    latex   example chm
  kernels                           text    html    latex   example chm
  loaddatapkg                       text    html    latex   example chm
  macat-internal                    text    html    latex           chm
  plot.MACATevalScoring             text    html    latex   example chm
  preprocessedLoader                text    html    latex   example chm
  pythondata                        text    html    latex   example chm
  scoring                           text    html    latex   example chm
  stjd                              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\macat.Rcheck\00_pkg_src\macat\chm\macat.chm


Compile time: 0 minutes, 0 seconds
22	Topics
85	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\macat.Rcheck\00_pkg_src\macat\chm\macat.chm, 45,204 bytes
Compression decreased file by 38,196 bytes.
  preparing package macat for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
  adding MD5 sums

* DONE (macat)