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| Package 76/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
| genArise 1.14.0 IFC Development Team Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
| Package: genArise |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check genArise_1.14.0.tar.gz |
| RetCode: 0 |
| Time: 47.5 seconds |
| Status: OK |
| CheckDir: genArise.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/genArise.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'genArise/DESCRIPTION' ... OK * this is package 'genArise' version '1.14.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'genArise' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE analysis.window : bg.question: no visible binding for '<<-' assignment to 'op.counter' analysis.window : bg.question: no visible binding for global variable 'op.counter' analysis.window : normalized.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : normalized.gui: no visible binding for global variable 'op.counter' analysis.window : filter.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : filter.gui: no visible binding for global variable 'op.counter' analysis.window : remove.duplicates.gui: no visible binding for '<<-' assignment to 'op.counter' analysis.window : remove.duplicates.gui: no visible binding for global variable 'op.counter' analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "OriginalMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "OriginalMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "CorrectedMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "CorrectedMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NormalMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NormalMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "FilterMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "FilterMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesCy3vsCy5.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesRvsI.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesRvsI.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window : <anonymous>: possible error in pdf(paste(name, "NoDuplicatesMvsA.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "NoDuplicatesMvsA.pdf", sep = "_")): unused argument(s) (horiz = F) analysis.window: no visible binding for '<<-' assignment to 'op.counter' analysis.window: no visible binding for global variable 'op.counter' annotations: no visible global function definition for 'print.xtable' genArise.init: no visible binding for '<<-' assignment to 'op.counter' genArise.init : nuevo.project: no visible global function definition for 'select.experiments' old.project : save.pdf: possible error in pdf(name, horiz = F, height = 8, width = 8, title = paste(name, sep = "_")): unused argument(s) (horiz = F) old.project : <anonymous>: possible error in pdf(paste(name, ".pdf", sep = ""), horiz = FALSE, height = 8, width = 8, title = name): unused argument(s) (horiz = FALSE) principal : save.as.pdf: possible error in pdf(paste(name, "R&G.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "R&G.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "BgCy5.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "BgCy5.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "BgCy3.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "BgCy3.pdf", sep = "_")): unused argument(s) (horiz = F) principal : save.as.pdf: possible error in pdf(paste(name, "Swap.pdf", sep = "_"), horiz = F, height = 8, width = 8, title = paste(name, "Swap.pdf", sep = "_")): unused argument(s) (horiz = F) Zscore.points : <anonymous>: possible error in pdf(paste(name, ".pdf", sep = ""), horiz = FALSE, height = 8, width = 8, title = name): unused argument(s) (horiz = FALSE) Found possibly global 'T' or 'F' in the following functions: analysis.window old.project principal * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating genArise-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating genArise-manual.tex ... OK * checking genArise-manual.tex ... OK
genArise.Rcheck/00install.out:
* Installing *source* package 'genArise' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-3 2006-04-06
Loading required package: tkrplot
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: xtable
** help
>>> Building/Updating help pages for package 'genArise'
Formats: text html latex example
DataSet-class text html latex
Simon text html latex example
Spot-class text html latex
WT.dataset text html latex example
Zscore text html latex example
Zscore.plot text html latex example
Zscore.points text html latex
a.arise text html latex example
alter.unique text html latex example
analysis.window text html latex
annotations text html latex
back.gui text html latex
bg.correct text html latex example
classes text html latex
create.project text html latex
cys.plot text html latex example
filter.spot text html latex example
genArise text html latex
genArise.init text html latex
genMerge text html latex
get.Zscore text html latex
get.values text html latex
global.norm text html latex example
graphic.choose text html latex
grid.norm text html latex example
help text html latex
i.arise text html latex example
imageLimma text html latex example
m.arise text html latex example
ma.plot text html latex example
make.swap text html latex
meanUnique text html latex example
note text html latex
old.project text html latex
post.analysis text html latex
principal text html latex
projects.select text html latex
r.arise text html latex example
read.dataset text html latex
read.spot text html latex
reset.history text html latex
ri.plot text html latex example
set.grid.properties text html latex
set.history.project text html latex
set.path.project text html latex
set.project.properties text html latex
single.norm text html latex
spotUnique text html latex example
swap.select text html latex
trim text html latex example
write.dataSet text html latex example
write.spot text html latex example
write.zscore text html latex example
** building package indices ...
* DONE (genArise)