Package: gaggle

Version: 1.6.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check gaggle_1.6.0.tar.gz

RetCode: 0

Time: 25.5 seconds

Status: OK

CheckDir: gaggle.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/gaggle.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
broadcast: no visible binding for global variable 'goose'
.broadcastAssociativeArray: no visible binding for global variable
  'goose'
.broadcastEnvironment: no visible binding for global variable 'goose'
.broadcastGraph: no visible binding for global variable 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'goose'
gaggleInit: no visible binding for '<<-' assignment to 'targetGoose'
gaggleInit: no visible binding for global variable 'goose'
geese: no visible binding for global variable 'goose'
getCluster: no visible binding for global variable 'goose'
getHashMap: no visible binding for global variable 'goose'
getMatrix: no visible binding for global variable 'goose'
getNameList: no visible binding for global variable 'goose'
getNetwork: no visible binding for global variable 'goose'
getSpecies: no visible binding for global variable 'goose'
getTargetGoose: no visible binding for global variable 'goose'
hideGoose: no visible binding for global variable 'goose'
setSpecies: no visible binding for global variable 'goose'
setTargetGoose: no visible binding for '<<-' assignment to
  'targetGoose'
setTargetGoose: no visible binding for global variable 'goose'
showGoose: no visible binding for global variable 'goose'
testGagglePackage: no visible global function definition for
  'test.gaggle'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gaggle-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaggle-manual.tex ... OK
* checking gaggle-manual.tex ... OK

* Installing *source* package 'gaggle' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'gaggle'
     Formats: text html latex example 
  broadcast                         text    html    latex
  gaggleInit                        text    html    latex
  geese                             text    html    latex
  getCluster                        text    html    latex
  getHashMap                        text    html    latex
  getMatrix                         text    html    latex
  getNameList                       text    html    latex
  getNetwork                        text    html    latex
  getSpecies                        text    html    latex
  getTargetGoose                    text    html    latex
  hideGoose                         text    html    latex
  setSpecies                        text    html    latex
  setTargetGoose                    text    html    latex
  showGoose                         text    html    latex
  testGagglePackage                 text    html    latex
** building package indices ...
* DONE (gaggle)