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Package 70/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
fbat 1.2.0 Weiliang Qiu Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: fbat |
Version: 1.2.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check fbat_1.2.0.tar.gz |
RetCode: 0 |
Time: 35.5 seconds |
Status: OK |
CheckDir: fbat.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/fbat.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'fbat/DESCRIPTION' ... OK * this is package 'fbat' version '1.2.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'fbat' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating fbat-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating fbat-manual.tex ... OK * checking fbat-manual.tex ... OK
fbat.Rcheck/00install.out:
* Installing *source* package 'fbat' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c FBAT.c -o FBAT.o gfortran -fpic -g -O2 -Wall -c missGFreq.f -o missGFreq.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c register.c -o register.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o fbat.so FBAT.o missGFreq.o register.o -lgfortran -lm -lgcc_s -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: MASS Loading required package: GeneticsBase Loading required package: combinat Attaching package: 'combinat' The following object(s) are masked from package:utils : combn Loading required package: xtable Loading required package: mvtnorm Loading required package: haplo.stats ** help >>> Building/Updating help pages for package 'fbat' Formats: text html latex example checkMarkers text html latex example checkMendelian text html latex example fbat text html latex example getFounders text html latex example missGFreq text html latex example pedAFreq text html latex example pedFlagHomo text html latex example pedGFreq text html latex example pedHardyWeinberg text html latex example readHapMap text html latex example readLink text html latex example readPed text html latex example sampleInfoCEU text html latex example sampleInfoCHB text html latex example sampleInfoJPT text html latex example sampleInfoYRI text html latex example summaryPvalue text html latex example viewFlagHomo text html latex example viewHW text html latex example viewstat text html latex example ** building package indices ... * DONE (fbat)