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Package 53/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
copa 1.6.0 James W. MacDonald Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: copa |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check copa_1.6.0.tar.gz |
RetCode: 0 |
Time: 28.6 seconds |
Status: OK |
CheckDir: copa.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/copa.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'copa/DESCRIPTION' ... OK * this is package 'copa' version '1.6.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'copa' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE pSum: no visible binding for global variable 'mat' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating copa-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating copa-manual.tex ... OK * checking copa-manual.tex ... OK
copa.Rcheck/00install.out:
* Installing *source* package 'copa' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c copa.c -o copa.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o copa.so copa.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. ** help >>> Building/Updating help pages for package 'copa' Formats: text html latex example copa text html latex example copa.package text html latex copaFilter text html latex copaPerm text html latex copaTable text html latex example getans text html latex pSum text html latex perm.mat text html latex plotCopa text html latex example scatterPlotCopa text html latex example summaryCopa text html latex example ** building package indices ... * DONE (copa)