Package: cellHTS2

Version: 2.2.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check cellHTS2_2.2.0.tar.gz

RetCode: 0

Time: 527.1 seconds

Status: OK

CheckDir: cellHTS2.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/cellHTS2.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating cellHTS2-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating cellHTS2-manual.tex ... OK
* checking cellHTS2-manual.tex ... OK

* Installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: prada
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-01)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines

Attaching package: 'survival'


	The following object(s) are masked from package:robustbase :

	 heart 

Loading required package: splots
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'cellHTS2'
     Formats: text html latex example 
  Bscore                            text    html    latex   example
  Data                              text    html    latex
  ROC-class                         text    html    latex   example
  ROC                               text    html    latex   example
  annotate                          text    html    latex   example
  batch                             text    html    latex
  bdgpbiomart                       text    html    latex   example
  cellHTS-class                     text    html    latex   example
  cellHTS2                          text    html    latex
  configurationAsScreenPlot         text    html    latex   example
  configure                         text    html    latex   example
  convertOldCellHTS                 text    html    latex   example
  convertWellCoordinates            text    html    latex   example
  data-KcViab                       text    html    latex   example
  data-KcViabSmall                  text    html    latex   example
  data-dualCh                       text    html    latex   example
  data-oldKcViabSmall               text    html    latex   example
  getDynamicRange                   text    html    latex   example
  getEnVisionRawData                text    html    latex   example
  getMeasureRepAgreement            text    html    latex   example
  getTopTable                       text    html    latex   example
  getZfactor                        text    html    latex   example
  imageScreen                       text    html    latex   example
  intensityFiles                    text    html    latex
  normalizePlates                   text    html    latex   example
  oneRowPerId                       text    html    latex   example
  plate                             text    html    latex
  plateEffects                      text    html    latex
  plotSpatialEffects                text    html    latex   example
  readHTAnalystData                 text    html    latex   example
  readPlateList                     text    html    latex   example
  scores2calls                      text    html    latex   example
  spatialNormalization              text    html    latex   example
  state                             text    html    latex
  summarizeChannels                 text    html    latex   example
  summarizeReplicates               text    html    latex   example
  wellAnno                          text    html    latex
  write.tabdel                      text    html    latex   example
  writeReport                       text    html    latex   example
  writeTab                          text    html    latex   example
** building package indices ...
* DONE (cellHTS2)