Package: affypdnn

Version: 1.12.0

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check affypdnn_1.12.0.tar.gz

RetCode: 0

Time: 375.7 seconds

Status: OK

CheckDir: affypdnn.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/affypdnn.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'affypdnn/DESCRIPTION' ... OK
* this is package 'affypdnn' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affypdnn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'transform.ProbeSet':
  transform.ProbeSet

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating affypdnn-Ex.R ... OK
* checking examples ... OK
* creating affypdnn-manual.tex ... OK
* checking affypdnn-manual.tex ... OK

* Installing *source* package 'affypdnn' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'affypdnn'
     Formats: text html latex example 
  chiptype.pdnn.params              text    html    latex   example
  expressopdnn                      text    html    latex   example
  find.params.pdnn                  text    html    latex   example
  generateExprVal.method.pdnn       text    html    latex   example
  matplotProbesPDNN                 text    html    latex   example
  pdnn.params.chiptype              text    html    latex   example
  transform.ProbeSet                text    html    latex   example
** building package indices ...
* DONE (affypdnn)