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Package 6/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
affy 1.16.0 Rafael A. Irizarry Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | [ OK ] | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: affy |
Version: 1.16.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build affy |
RetCode: 0 |
Time: 78.0 seconds |
Status: OK |
PackageFile: affy_1.16.0.tar.gz |
* checking for file 'affy/DESCRIPTION' ... OK * preparing 'affy': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst455276177 ---------- Making package affy ------------ ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** adding build stamp to DESCRIPTION making DLL ... making chipbackground.d from chipbackground.c making getall_locations.d from getall_locations.c making mas5calls.d from mas5calls.c making rma2.d from rma2.c making rma_background2.d from rma_background2.c making rma_common.d from rma_common.c gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c chipbackground.c -o chipbackground.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c getall_locations.c -o getall_locations.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c mas5calls.c -o mas5calls.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c rma2.c -o rma2.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c rma_background2.c -o rma_background2.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Ie:/biocbld/bbs-2.1-bioc/R/include -I"e:/biocbld/bbs-2.1-bioc/R/library/preprocessCore/include" -Wall -O3 -c rma_common.c -o rma_common.o windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i affy_res.rc -o affy_res.o gcc-sjlj -std=gnu99 -shared -s -o affy.dll affy.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_background2.o rma_common.o affy_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing demos installing inst files installing data files preparing package affy for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affyio Loading required package: preprocessCore Creating a new generic function for "open" in "affy" Creating a new generic function for "update" in "affy" Creating a new generic function for "close" in "affy" installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'affy' Formats: text html latex example chm AffyBatch-class text html latex example chm AffyRNAdeg text html latex example chm MAplot text html latex example chm ProbeSet-class text html latex example chm ProgressBarText-class text html latex example chm SpikeIn text html latex chm affy-options text html latex example chm affy.scalevalue.exprSet text html latex chm affybatch.example text html latex chm barplot.ProbeSet text html latex example chm bg.adjust text html latex chm bgc text html latex example chm cdfFromBioC text html latex example chm cdfenv.example text html latex chm cleancdfname text html latex example chm debug.affy123 text html latex chm expresso text html latex example chm expressoWidget text html latex example chm fit.li.wong text html latex example chm generateExprSet-methods text html latex example chm generateExprVal-methods text html latex example chm generateExprVal.method.avgdiff text html latex example chm generateExprVal.method.playerout text html latex chm hlog text html latex chm justrma text html latex example chm list.celfiles text html latex example chm loess.normalize text html latex chm maffy.normalise text html latex example chm maffy.subset text html latex example chm mas5 text html latex example chm mas5calls text html latex example chm merge.AffyBatch text html latex example chm multiloess text html latex chm mva.pairs text html latex example chm normalize-methods text html latex example chm normalize text html latex chm normalize.constant text html latex chm normalize.contrast text html latex example chm normalize.invariantset text html latex chm normalize.loess text html latex example chm normalize.qspline text html latex chm normalize.quantiles text html latex chm normalize.quantiles.robust text html latex chm pairs.AffyBatch text html latex example chm plot.ProbeSet text html latex example chm plot.density text html latex example chm plotLocation text html latex example chm pmcorrect text html latex example chm ppsetApply text html latex example chm probeMatch-methods text html latex chm probeNames-methods text html latex chm read.affybatch text html latex example chm read.probematrix text html latex example chm rma text html latex example chm setAffyOptions text html latex example chm simplemultiLoess text html latex chm summary text html latex chm tukey.biweight text html latex chm whatcdf text html latex chm xy2indices text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\affy\chm\affy.chm Compile time: 0 minutes, 2 seconds 61 Topics 346 Local links 9 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\affy\chm\affy.chm, 98,481 bytes Compression decreased file by 161,865 bytes. adding MD5 sums * DONE (affy) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'affy_1.16.0.tar.gz'