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Package 4/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
adSplit 1.8.0 Claudio Lottaz Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: adSplit |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check adSplit_1.8.0.tar.gz |
RetCode: 0 |
Time: 112.6 seconds |
Status: OK |
CheckDir: adSplit.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/adSplit.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'adSplit/DESCRIPTION' ... OK * this is package 'adSplit' version '1.8.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'adSplit' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE figure_ccimage: no visible global function definition for 'cc_image' figure_ccimage: no visible binding for global variable 'res' figure_induced: no visible binding for global variable 'rossResult' figure_induced: no visible global function definition for 'oneGOGraph' figure_induced: no visible global function definition for 'GOGraph' figure_induced: no visible global function definition for 'join' figure_induced: no visible global function definition for 'nodes' figure_induced: no visible global function definition for 'edges' image.splitSet: no visible binding for '<<-' assignment to 'root.dist' image.splitSet: no visible binding for global variable 'root.dist' image.splitSet: no visible global function definition for 'collect.lines' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'hist.splitSet': hist.splitSet S3 methods shown with full name in documentation object 'image.splitSet': image.splitSet S3 methods shown with full name in documentation object 'print.split': print.split S3 methods shown with full name in documentation object 'print.splitSet': print.splitSet The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating adSplit-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating adSplit-manual.tex ... OK * checking adSplit-manual.tex ... OK
adSplit.Rcheck/00install.out:
* Installing *source* package 'adSplit' ... ** libs g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c adSplit.cpp -o adSplit.o g++ -shared -L/usr/local/lib64 -o adSplit.so adSplit.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: cluster Loading required package: multtest Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: survival Loading required package: splines Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: GO Loading required package: KEGG ** help >>> Building/Updating help pages for package 'adSplit' Formats: text html latex example adSplit-internal text html latex adSplit text html latex example diana2means text html latex example drawRandomPS text html latex example golubKEGGSplits text html latex example hist.splitSet text html latex example image.splitSet text html latex example makeEID2PROBESenv text html latex example print.split text html latex print.splitSet text html latex example randomDiana2means text html latex example ** building package indices ... * DONE (adSplit)