BioC 2.1: CHECK report for RdbiPgSQL on wellington

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/RdbiPgSQL.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'RdbiPgSQL/DESCRIPTION' ... OK
* this is package 'RdbiPgSQL' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RdbiPgSQL' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
  dbColumnInfo.PgSQL.result

S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
  dbReadTable.PgSQL.conn

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating RdbiPgSQL-Ex.R ... OK
* checking examples ... OK
* creating RdbiPgSQL-manual.tex ... OK
* checking RdbiPgSQL-manual.tex ... OK

* Installing *source* package 'RdbiPgSQL' ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/pgsql -I/usr/local/include    -fpic  -g -O2 -Wall -c PgSQL.c -o PgSQL.o
PgSQL.c: In function `PgSQLgetResult':
PgSQL.c:226: warning: `column' might be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include/pgsql -I/usr/local/include    -fpic  -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9: warning: `mkInteger' defined but not used
PgSQL.h:18: warning: `mkLogical' defined but not used
PgSQL.h:27: warning: `mkString_safe' defined but not used
PgSQL.h:33: warning: `fetchPgString' defined but not used
PgSQL.h:46: warning: `fetchPgInteger' defined but not used
PgSQL.h:66: warning: `fetchPgDouble' defined but not used
PgSQL.h:89: warning: `fetchPgLogical' defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq  -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** help
 >>> Building/Updating help pages for package 'RdbiPgSQL'
     Formats: text html latex example 
  PgSQL                             text    html    latex
  dbAppendTable.PgSQL.conn          text    html    latex
  dbAppendTable                     text    html    latex
  dbClearResult.PgSQL.result        text    html    latex
  dbColumnInfo.PgSQL.result         text    html    latex
  dbConnect.PgSQL                   text    html    latex
  dbConnectionInfo.PgSQL.conn       text    html    latex
  dbDisconnect.PgSQL.conn           text    html    latex
  dbGetQuery.PgSQL.conn             text    html    latex
  dbGetResult.PgSQL.result          text    html    latex
  dbListTables.PgSQL.conn           text    html    latex
  dbReadTable.PgSQL.conn            text    html    latex
  dbResultInfo.PgSQL.result         text    html    latex
  dbSendQuery.PgSQL.conn            text    html    latex
  dbWriteTable.PgSQL.conn           text    html    latex
  internal                          text    html    latex
  psql                              text    html    latex
** building package indices ...
* DONE (RdbiPgSQL)

Package 180/234	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
RdbiPgSQL 1.12.0 Jianhua Zhang Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709	lamb1	Linux (SUSE 10.1)	x86_64	OK	OK
	wellington	Linux (SUSE 9.2)	i686	OK	[ OK ]
	liverpool	Windows Server 2003 R2 (32-bit)	x64	N O T S U P P O R T E D
	pitt	Mac OS X (10.4.10)	i386	OK	OK	OK

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