Package: OCplus

Version: 1.12.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check OCplus_1.12.0.tar.gz

RetCode: 0

Time: 110.9 seconds

Status: OK

CheckDir: OCplus.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/OCplus.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
  plot.FDR.result

S3 methods shown with full name in documentation object 'plot.fdr1d.result':
  plot.fdr1d.result

S3 methods shown with full name in documentation object 'plot.fdr2d.result':
  plot.fdr2d.result

S3 methods shown with full name in documentation object 'summary.fdr.result':
  summary.fdr.result

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating OCplus-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating OCplus-manual.tex ... OK
* checking OCplus-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/OCplus.Rcheck


---------- Making package OCplus ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
Note: unmatched right brace in 'plot.fdr2d.result' on or after line 43
Note: unmatched right brace in 'plot.fdr2d.result.Rd' on or after line 43
 >>> Building/Updating help pages for package 'OCplus'
     Formats: text html latex example chm 
  DrawContourlines                  text    html    latex           chm
  EOC                               text    html    latex   example chm
  FDR                               text    html    latex   example chm
  MAsim.smyth                       text    html    latex   example chm
  OCshow                            text    html    latex   example chm
  TOC                               text    html    latex   example chm
  Undocumented                      text    html    latex           chm
  average.fdr                       text    html    latex   example chm
  fdr1d                             text    html    latex   example chm
  fdr2d                             text    html    latex   example chm
  plot.FDR.result                   text    html    latex   example chm
  plot.fdr1d.result                 text    html    latex   example chm
  plot.fdr2d.result                 text    html    latex   example chm
  samplesize                        text    html    latex   example chm
  smooth1d                          text    html    latex   example chm
  summary.fdr.result                text    html    latex   example chm
  tMixture                          text    html    latex   example chm
  tstatistics                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\OCplus.Rcheck\00_pkg_src\OCplus\chm\OCplus.chm


Compile time: 0 minutes, 0 seconds
19	Topics
85	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\OCplus.Rcheck\00_pkg_src\OCplus\chm\OCplus.chm, 65,019 bytes
Compression decreased file by 47,828 bytes.
  preparing package OCplus for lazy loading
Loading required package: akima
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
  adding MD5 sums

* DONE (OCplus)