Package: GlobalAncova

Version: 3.4.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build GlobalAncova

RetCode: 0

Time: 391.0 seconds

Status: OK

PackageFile: GlobalAncova_3.4.0.tar.gz

* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* preparing 'GlobalAncova':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GlobalAncova' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function `permut':
GlobalAncova.c:198: warning: `ord_perm' might be used uninitialized in this function
GlobalAncova.c: In function `permut_withFperm':
GlobalAncova.c:119: warning: `ord_perm' might be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c ludcmp.c -o ludcmp.o
ludcmp.c:232:24: warning: no newline at end of file
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c matrix.c -o matrix.o
gcc -std=gnu99 -shared -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: corpcor
Loading required package: globaltest
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
** help
 >>> Building/Updating help pages for package 'GlobalAncova'
     Formats: text html latex example 
  GAGO                              text    html    latex   example
  GlobalAncova-methods              text    html    latex
  GlobalAncova                      text    html    latex   example
  GlobalAncova.closed-methods       text    html    latex
  GlobalAncova.closed               text    html    latex
  GlobalAncova.decomp               text    html    latex   example
  Plot.all                          text    html    latex   example
  Plot.genes-methods                text    html    latex
  Plot.genes                        text    html    latex   example
  Plot.sequential                   text    html    latex   example
  Plot.subjects-methods             text    html    latex
  Plot.subjects                     text    html    latex   example
  colon.normal                      text    html    latex   example
  colon.pheno                       text    html    latex   example
  colon.tumour                      text    html    latex   example
  pair.compare                      text    html    latex   example
  pathways                          text    html    latex   example
  phenodata                         text    html    latex   example
  vantVeer                          text    html    latex   example
** building package indices ...
* DONE (GlobalAncova)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GlobalAncova_3.4.0.tar.gz'