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Package 83/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GeneticsBase 1.2.0 Gregory Warnes Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: GeneticsBase |
Version: 1.2.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GeneticsBase_1.2.0.tar.gz |
RetCode: 0 |
Time: 100.7 seconds |
Status: OK |
CheckDir: GeneticsBase.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/GeneticsBase.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'GeneticsBase/DESCRIPTION' ... OK * this is package 'GeneticsBase' version '1.2.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GeneticsBase' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating GeneticsBase-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/GeneticsBase.Rcheck/tests' Running 'ExampleScript001.R' Running 'test.R' make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/GeneticsBase.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating GeneticsBase-manual.tex ... OK * checking GeneticsBase-manual.tex ... OK
GeneticsBase.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/GeneticsBase.Rcheck ---------- Making package GeneticsBase ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making LdMax.d from LdMax.cpp making convert.d from convert.cpp making getLDdist.d from getLDdist.cpp making readGenes.ped.d from readGenes.ped.cpp making register.d from register.cpp g++-sjlj -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c LdMax.cpp -o LdMax.o g++-sjlj -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c convert.cpp -o convert.o g++-sjlj -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c getLDdist.cpp -o getLDdist.o g++-sjlj -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c readGenes.ped.cpp -o readGenes.ped.o g++-sjlj -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O2 -c register.cpp -o register.o windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i GeneticsBase_res.rc -o GeneticsBase_res.o g++-sjlj -shared -s -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files preparing package GeneticsBase for lazy loading Loading required package: combinat Attaching package: 'combinat' The following object(s) are masked from package:utils : combn Loading required package: xtable Loading required package: mvtnorm Loading required package: haplo.stats installing man source files installing indices Loading required package: methods Loading required package: combinat Attaching package: 'combinat' The following object(s) are masked from package:utils : combn Loading required package: xtable Loading required package: mvtnorm Loading required package: haplo.stats not zipping data installing help >>> Building/Updating help pages for package 'GeneticsBase' Formats: text html latex example chm ALZH text html latex example chm Armitage text html latex example chm CAMP text html latex example chm HWE text html latex example chm HWE.chisq text html latex example chm HWE.exact text html latex example chm LD-class text html latex example chm LD text html latex example chm LDband-class text html latex example chm LDdist-class text html latex chm PGtables text html latex example chm PerlgenExample text html latex example chm PfizerExample text html latex example chm alleleCount text html latex example chm alleleLevels text html latex example chm alleleSummary text html latex example chm alleles text html latex example chm binsearch text html latex example chm callCodes text html latex example chm ci.balance text html latex example chm convert text html latex example chm decodeCallCodes text html latex example chm desMarkers text html latex example chm description text html latex example chm diseq text html latex example chm errorMetrics text html latex example chm extractAlleles text html latex example chm fastGrid text html latex example chm founderGeneSet text html latex example chm geneSet-class text html latex example chm geneSet2Ped text html latex example chm genotypeCoding text html latex example chm genotypeLevels text html latex example chm genotypeSummary text html latex example chm genotypes text html latex example chm gregorius text html latex example chm haplo.em.w text html latex example chm haplo.scan.w text html latex example chm haplo.score.slide.w text html latex example chm haplo.score.w text html latex example chm hapmapchr text html latex example chm homozygote text html latex example chm html text html latex example chm left text html latex example chm makeMarkerInfo text html latex example chm makeTransTable text html latex example chm makeTransTableList text html latex example chm markerInfo text html latex example chm markerNames text html latex example chm markerSummary text html latex example chm missingCodes text html latex example chm nallele text html latex example chm nmarker text html latex example chm notes text html latex example chm ped2geneSet text html latex chm phase text html latex example chm ploidy text html latex example chm print.LD text html latex example chm qtlex text html latex example chm read.pfizer text html latex example chm read.phe text html latex example chm readGenes text html latex example chm readGenes.ped text html latex example chm readGenes.perlegen text html latex example chm readGenes.pfizer text html latex example chm sampleInfo text html latex example chm studyInfo text html latex example chm transTables text html latex example chm xbat text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\GeneticsBase.Rcheck\00_pkg_src\GeneticsBase\chm\GeneticsBase.chm Compile time: 0 minutes, 1 second 70 Topics 266 Local links 8 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\GeneticsBase.Rcheck\00_pkg_src\GeneticsBase\chm\GeneticsBase.chm, 103,413 bytes Compression decreased file by 191,524 bytes. adding MD5 sums * DONE (GeneticsBase)