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Package 97/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GSEABase 1.0.1 Biocore Team c/o BioC user list Last Changed Date: 2007-10-05 12:41:11 -0700 Last Changed Rev: 27791 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | [ OK ] | OK |
Package: GSEABase |
Version: 1.0.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check GSEABase_1.0.1.tar.gz |
RetCode: 0 |
Time: 139.7 seconds |
Status: OK |
CheckDir: GSEABase.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/GSEABase.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'GSEABase/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GSEABase' version '1.0.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GSEABase' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating GSEABase-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating GSEABase-manual.tex ... OK * checking GSEABase-manual.tex ... OK
GSEABase.Rcheck/00install.out:
* Installing *source* package 'GSEABase' ... ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite ** help >>> Building/Updating help pages for package 'GSEABase' Formats: text html latex example CollectionType-class text html latex example CollectionType-constructors text html latex example GSEABase-package text html latex example GeneColorSet-class text html latex example GeneColorSet-methods text html latex GeneIdentifierType-class text html latex example GeneIdentifierType-constructors text html latex example GeneSet-class text html latex example GeneSet-methods text html latex example GeneSetCollection-class text html latex example GeneSetCollection-methods text html latex example details-methods text html latex getBroadSets text html latex example incidence-methods text html latex example mapIdentifiers-methods text html latex ** building package indices ... * DONE (GSEABase)