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Package 87/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GEOquery 2.2.0 Sean Davis Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | [ ERROR ] | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: GEOquery |
Version: 2.2.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build GEOquery |
RetCode: 1 |
Time: 223.3 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'GEOquery/DESCRIPTION' ... OK * preparing 'GEOquery': * checking DESCRIPTION meta-information ... OK * installing the package to re-build vignettes * Installing *source* package 'GEOquery' ... ** R ** inst ** help >>> Building/Updating help pages for package 'GEOquery' Formats: text html latex example GDS-class text html latex GDS2MA text html latex example GEOData-class text html latex GEODataTable-class text html latex GPL-class text html latex GSE-class text html latex GSM-class text html latex dataTable text html latex getGEO text html latex example getGEOfile text html latex example gunzip text html latex parseGEO text html latex ** building package indices ... * DONE (GEOquery) * creating vignettes ... ERROR Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: RCurl trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS1.soft.gz' ftp data connection made, file length 162427 bytes opened URL ================================================== downloaded 158 Kb trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3&form=text&view=full' Content type 'geo/text' length unknown opened URL .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ... downloaded 213 Kb trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE462/GSE462_family.soft.gz' ftp data connection made, file length 550629 bytes opened URL ================================================== downloaded 537 Kb Error: processing vignette 'GEOquery.Rnw' failed with diagnostics: chunk 7 Error in curlPerform(curl = curl, .opts = opts) : Connect failed; Operation now in progress Execution halted