Package: EBarrays

Version: 2.2.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check EBarrays_2.2.0.tar.gz

RetCode: 0

Time: 407.3 seconds

Status: OK

CheckDir: EBarrays.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/EBarrays.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'EBarrays/DESCRIPTION' ... OK
* this is package 'EBarrays' version '2.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBarrays' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBarrays-Ex.R ... OK
* checking examples ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBarrays-manual.tex ... OK
* checking EBarrays-manual.tex ... OK

* Installing *source* package 'EBarrays' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c ebarrays.c -o ebarrays.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBarrays.so ebarrays.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c ebarrays.c -o ebarrays.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBarrays.so ebarrays.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
Loading required package: cluster
** help
Note: unmatched right brace in 'postprob' on or after line 66
 >>> Building/Updating help pages for package 'EBarrays'
     Formats: text html latex example 
  EBarrays-Internal                 text    html    latex
  crit.fun                          text    html    latex   example
  ebarraysFamily-class              text    html    latex   example
  ebplots                           text    html    latex   example
  emfit                             text    html    latex   example
  gould                             text    html    latex   example
  postprob                          text    html    latex   example
  utilities                         text    html    latex   example
** building package indices ...
* DONE (EBarrays)