Package: DNAcopy

Version: 1.12.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build DNAcopy

RetCode: 0

Time: 31.9 seconds

Status: OK

PackageFile: DNAcopy_1.12.0.tar.gz

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst180429049


---------- Making package DNAcopy ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making flchoose.d from flchoose.c
making fphyper.d from fphyper.c
making fpnorm.d from fpnorm.c
making rshared.d from rshared.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c flchoose.c -o flchoose.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c fphyper.c -o fphyper.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c fpnorm.c -o fpnorm.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c rshared.c -o rshared.o
gfortran-sjlj  -O3 -Wall  -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function
changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function
changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function
gfortran-sjlj  -O3 -Wall  -c getbdry.f -o getbdry.o
gfortran-sjlj  -O3 -Wall  -c hybcpt.f -o hybcpt.o
gfortran-sjlj  -O3 -Wall  -c prune.f -o prune.o
gfortran-sjlj  -O3 -Wall  -c segmentp.f -o segmentp.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i DNAcopy_res.rc -o DNAcopy_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o DNAcopy.dll DNAcopy.def flchoose.o fphyper.o fpnorm.o rshared.o changepoints.o getbdry.o hybcpt.o prune.o segmentp.o DNAcopy_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing demos
  installing inst files
  installing data files
  preparing package DNAcopy for lazy data loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example chm 
  CNA                               text    html    latex   example chm
  DNAcopy-internal                  text    html    latex           chm
  DNAcopy                           text    html    latex           chm
  coriell                           text    html    latex           chm
  cytoBand                          text    html    latex           chm
  getbdry                           text    html    latex           chm
  plot.DNAcopy                      text    html    latex   example chm
  segment                           text    html    latex   example chm
  segments.p                        text    html    latex   example chm
  smooth.CNA                        text    html    latex   example chm
  subset.CNA                        text    html    latex   example chm
  subset.DNAcopy                    text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\DNAcopy\chm\DNAcopy.chm





Compile time: 0 minutes, 1 second

13	Topics

26	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\DNAcopy\chm\DNAcopy.chm, 32,880 bytes

Compression decreased file by 11,767 bytes.

  adding MD5 sums

* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.12.0.tar.gz'