Package: CALIB

Version: 1.4.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build CALIB

RetCode: 0

Time: 57.7 seconds

Status: OK

PackageFile: CALIB_1.4.0.tar.gz

* checking for file 'CALIB/DESCRIPTION' ... OK
* preparing 'CALIB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst475231924


---------- Making package CALIB ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making Design.d from Design.cpp
making Estimation.d from Estimation.cpp
making NormalizedData.d from NormalizedData.cpp
making ParameterofOneArray.d from ParameterofOneArray.cpp
making RawDataofOneArray.d from RawDataofOneArray.cpp
making SpikeofOneArray.d from SpikeofOneArray.cpp
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c Design.cpp -o Design.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function 'SEXPREC* estimation(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
Estimation.cpp:144: warning: deprecated conversion from string constant to 'char*'
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c NormalizedData.cpp -o NormalizedData.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c ParameterofOneArray.cpp -o ParameterofOneArray.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c RawDataofOneArray.cpp -o RawDataofOneArray.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O2  -c SpikeofOneArray.cpp -o SpikeofOneArray.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i CALIB_res.rc -o CALIB_res.o
g++-sjlj   -shared -s  -o CALIB.dll CALIB.def Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o CALIB_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'CALIB'
     Formats: text html latex example chm 
  ParameterList-class               text    html    latex           chm
  RG                                text    html    latex   example chm
  RGList_CALIB-class                text    html    latex           chm
  SpikeList-class                   text    html    latex           chm
  adjustP2                          text    html    latex   example chm
  calibReadMe                       text    html    latex   example chm
  cbind                             text    html    latex   example chm
  dim                               text    html    latex   example chm
  dimnames                          text    html    latex   example chm
  estimateParameter                 text    html    latex   example chm
  getColClasses                     text    html    latex   example chm
  merge                             text    html    latex   example chm
  normalizeData                     text    html    latex   example chm
  normdata                          text    html    latex   example chm
  parameter                         text    html    latex   example chm
  plotNormalizedData                text    html    latex   example chm
  plotSpikeCI                       text    html    latex   example chm
  plotSpikeHI                       text    html    latex   example chm
  plotSpikeRG                       text    html    latex   example chm
  plotSpikeSpotError                text    html    latex   example chm
  read.rg                           text    html    latex   example chm
  read.spike                        text    html    latex           chm
  spike                             text    html    latex   example chm
  subsetting                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\CALIB\chm\CALIB.chm





Compile time: 0 minutes, 1 second

25	Topics

124	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\CALIB\chm\CALIB.chm, 54,880 bytes

Compression decreased file by 67,264 bytes.

  preparing package CALIB for lazy loading
Loading required package: limma
  adding MD5 sums

* DONE (CALIB)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'CALIB_1.4.0.tar.gz'