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Package 31/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Biobase 1.16.0 Biocore Team c/o BioC user list Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | [ OK ] | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: Biobase |
Version: 1.16.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build Biobase |
RetCode: 0 |
Time: 81.9 seconds |
Status: OK |
PackageFile: Biobase_1.16.0.tar.gz |
* checking for file 'Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst599283001 ---------- Making package Biobase ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making Rinit.d from Rinit.c making anyMissing.d from anyMissing.c making envir.d from envir.c making matchpt.d from matchpt.c making rowMedians.d from rowMedians.c making sublist_extract.d from sublist_extract.c gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c Rinit.c -o Rinit.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c anyMissing.c -o anyMissing.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c envir.c -o envir.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c matchpt.c -o matchpt.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c rowMedians.c -o rowMedians.o gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -c sublist_extract.c -o sublist_extract.o windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include -i Biobase_res.rc -o Biobase_res.o gcc-sjlj -std=gnu99 -shared -s -o Biobase.dll Biobase.def Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o Biobase_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files preparing package Biobase for lazy loading Loading required package: tools installing man source files installing indices Loading required package: methods not zipping data installing help >>> Building/Updating help pages for package 'Biobase' Formats: text html latex example chm Aggregate text html latex example chm Biobase-package text html latex chm ScalarObject-class text html latex example chm abstract text html latex chm addVig2Menu text html latex example chm annotatedDataFrameFrom-methods text html latex chm annotation text html latex chm anyMissing text html latex example chm assayData text html latex chm biocReposList text html latex example chm cache text html latex example chm channel text html latex example chm channelNames text html latex example chm class.AnnotatedDataFrame text html latex example chm class.AssayData text html latex chm class.ExpressionSet text html latex example chm class.MIAME text html latex chm class.MultiSet text html latex example chm class.NChannelSet text html latex example chm class.SnpSet text html latex chm class.Versioned text html latex example chm class.VersionedBiobase text html latex example chm class.Versions text html latex example chm class.VersionsNull text html latex example chm class.aggregator text html latex chm class.annotatedDataset text html latex chm class.characterORmiame text html latex chm class.container text html latex example chm class.eSet text html latex example chm class.exprList text html latex example chm class.exprMatrix text html latex chm class.exprSet text html latex example chm class.phenoData text html latex example chm classVersion text html latex example chm combine text html latex example chm contents text html latex example chm copyEnv text html latex example chm copySubstitute text html latex example chm createPackage text html latex example chm data.aaMap text html latex example chm data.eset text html latex example chm data.geneData text html latex example chm data.reporter text html latex example chm data.sample.ExpressionSet text html latex example chm data.sample.eSet text html latex example chm data.sample.exprSet.1 text html latex example chm data.sample.exprSet text html latex example chm defunct text html latex chm description text html latex chm dims text html latex chm dumpPackTxt text html latex example chm esApply text html latex example chm exprs text html latex chm featureData text html latex chm featureNames text html latex chm getPkgVigs text html latex example chm internals text html latex chm isCurrent text html latex example chm isUnique text html latex example chm isVersioned text html latex example chm lcSuffix text html latex example chm listLen text html latex example chm makeDataPackage text html latex example chm matchpt text html latex example chm multiassign text html latex example chm note text html latex example chm notes text html latex chm openPDF text html latex example chm openVignette text html latex example chm package.version text html latex example chm phenoData text html latex chm read.AnnotatedDataFrame text html latex example chm read.MIAME text html latex example chm read.exprSet text html latex example chm read.phenoData text html latex example chm readExpressionSet text html latex example chm reporterInfo text html latex chm reverseSplit text html latex example chm rowMedians text html latex example chm rowQ text html latex example chm selectChannels text html latex example chm selectSome text html latex example chm storageMode text html latex chm strbreak text html latex example chm subListExtract text html latex example chm testBioCConnection text html latex example chm updateObject text html latex example chm updateOldESet text html latex example chm userQuery text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\Biobase\chm\Biobase.chm Compile time: 0 minutes, 1 second 90 Topics 858 Local links 6 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\Biobase\chm\Biobase.chm, 142,806 bytes Compression decreased file by 315,420 bytes. adding MD5 sums * DONE (Biobase) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'Biobase_1.16.0.tar.gz'