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Package 28/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
BeadExplorer 1.4.0 Gareth Elvidge Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: BeadExplorer |
Version: 1.4.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check BeadExplorer_1.4.0.tar.gz |
RetCode: 0 |
Time: 91.0 seconds |
Status: OK |
CheckDir: BeadExplorer.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/BeadExplorer.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'BeadExplorer/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BeadExplorer' version '1.4.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BeadExplorer' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE batchAnalysis: no visible binding for global variable 'output' beadAnalysis: no visible binding for global variable 'examplebeadData' beadAnalysis: no visible binding for global variable 'examplebeadQC' boxplotArrays: no visible binding for global variable 'oqc' getQC2: no visible binding for global variable 'HumWG6' getQC2: no visible binding for global variable 'HumRef8' Found possibly global 'T' or 'F' in the following function: boxplotQC * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating BeadExplorer-Ex.R ... OK * checking examples ... OK * creating BeadExplorer-manual.tex ... OK * checking BeadExplorer-manual.tex ... OK
BeadExplorer.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/BeadExplorer.Rcheck ---------- Making package BeadExplorer ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help Note: unmatched right brace in 'beadData-class' on or after line 61 Note: unmatched right brace in 'beadData-class.Rd' on or after line 61 Note: unmatched right brace in 'readQC' on or after line 23 Note: unmatched right brace in 'readQC.Rd' on or after line 23 Note: unmatched right brace in 'scatterPlot' on or after line 44 Note: unmatched right brace in 'scatterPlot.Rd' on or after line 44 >>> Building/Updating help pages for package 'BeadExplorer' Formats: text html latex example chm HumRef8v1 text html latex example chm HumWG6v1 text html latex example chm addManifest text html latex example chm batchAnalysis text html latex example chm beadAnalysis text html latex example chm beadData-accessor text html latex chm beadData-class text html latex example chm beadQC-class text html latex example chm boxplotArrays text html latex example chm boxplotQC text html latex example chm clusterplot text html latex example chm cutoff text html latex example chm detectionCalls text html latex example chm dotplotArrays text html latex example chm dotplotQC text html latex example chm examplebeadData text html latex example chm examplebeadQC text html latex example chm extract text html latex example chm filterData text html latex example chm getAnnot text html latex example chm getArrayStats text html latex example chm getDet text html latex example chm getExprs text html latex example chm getID text html latex example chm getQC text html latex example chm getQC2 text html latex example chm htmloutput text html latex example chm multiDensity text html latex example chm multiecdf text html latex example chm normalise text html latex example chm pc text html latex example chm plotSamples text html latex example chm readBead text html latex example chm readManifest text html latex example chm readQC text html latex example chm scatterPlot text html latex example chm write.beadData text html latex example chm writeQC text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm Compile time: 0 minutes, 1 second 39 Topics 189 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm, 48,367 bytes Compression decreased file by 85,112 bytes. preparing package BeadExplorer for lazy loading Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: R2HTML Loading required package: tkWidgets Loading required package: DynDoc adding MD5 sums * DONE (BeadExplorer)