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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 238/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
topGO1.3.0Adrian AlexaLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | [ ERROR ] | skipped | skipped |
Package: topGO |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build topGO |
RetCode: 1 |
Time: 95.6 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'topGO/DESCRIPTION' ... OK * preparing 'topGO': * checking DESCRIPTION meta-information ... OK * installing the package to re-build vignettes * Installing *source* package 'topGO' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: graph Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: GO Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: SparseM Package SparseM (0.73) loaded. To cite, see citation("SparseM") Creating a new generic function for "print" in "topGO" ** help Note: unmatched right brace in 'buildGOgraph.topology' on or after line 21 Note: unmatched right brace in 'classicScore-class' on or after line 69 >>> Building/Updating help pages for package 'topGO' Formats: text html latex example GOFisherTest text html latex GOKSTest text html latex GOdata text html latex example annFUN.hgu text html latex example buildGOgraph.topology text html latex buildLevels text html latex example classicCount-class text html latex example classicScore-class text html latex example elimCount-class text html latex example elimScore-class text html latex example getPvalues text html latex example getSigGroups text html latex example groupGOTerms text html latex example groupStats-class text html latex example inducedGraph text html latex example mapGenes2GOgraph text html latex example printGenes-methods text html latex printGraph-methods text html latex example reverseArch text html latex example topGO-package text html latex topGOdata-class text html latex example topGOresult-class text html latex weightCount-class text html latex example weightScore-class text html latex ** building package indices ... * DONE (topGO) * creating vignettes ... ERROR Loading required package: graph Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: GO Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: SparseM Loading required package: survival Loading required package: splines Loading required package: multtest Error: processing vignette 'topGO.Rnw' failed with diagnostics: chunk 31 Error in eval.with.vis(expr, .GlobalEnv, baseenv()) : could not find function "print.xtable" Execution halted