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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 233/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
stam1.7.0Claudio LottazLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | [ ERROR ] | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: stam |
Version: 1.7.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build stam |
RetCode: 1 |
Time: 257.8 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'stam/DESCRIPTION' ... OK * preparing 'stam': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst157260241 ---------- Making package stam ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making util.d from util.c gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c util.c -o util.o windres -I e:/biocbld/bbs-2.1-bioc/R/include -i stam_res.rc -o stam_res.o gcc -shared -s -o stam.dll stam.def util.o stam_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files preparing package stam for lazy loading Loading required package: GO Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: pamr Loading required package: cluster Loading required package: survival Loading required package: splines Loading required package: annaffy Loading required package: KEGG installing man source files installing indices Warning: 'golubTrain.cv' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'golubTrain.fit' looks like a pre-2.4.0 S4 object: please recreate it not zipping data installing help Note: unmatched right brace in 'golubTrain.cv' on or after line 10 Note: unmatched right brace in 'golubTrain.cv.Rd' on or after line 10 Note: unmatched right brace in 'golubTrain.fit' on or after line 10 Note: unmatched right brace in 'golubTrain.fit.Rd' on or after line 10 Note: unmatched right brace in 'stamPrediction-class' on or after line 52 Note: unmatched right brace in 'stamPrediction-class.Rd' on or after line 52 >>> Building/Updating help pages for package 'stam' Formats: text html latex example chm golubTrain.cv text html latex chm golubTrain.fit text html latex chm image.stamPrediction text html latex chm plot.stamCV text html latex chm plot.stamFit text html latex chm plot.stamPrediction text html latex chm stam-internal text html latex chm stam.cv text html latex example chm stam.evaluate text html latex example chm stam.fit text html latex example chm stam.graph.plot text html latex chm stam.net text html latex example chm stam.predict text html latex example chm stam.rgb.colors text html latex example chm stam.serve text html latex example chm stam.writeHTML text html latex example chm stamCV-class text html latex chm stamEval-class text html latex chm stamFit-class text html latex chm stamINode-class text html latex chm stamLeaf-class text html latex chm stamNet-class text html latex chm stamNode-class text html latex chm stamPrediction-class text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\stam\chm\stam.chm Compile time: 0 minutes, 1 second 25 Topics 128 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\stam\chm\stam.chm, 54,519 bytes Compression decreased file by 70,152 bytes. adding MD5 sums * DONE (stam) * creating vignettes ... ERROR Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: GO Loading required package: pamr Loading required package: cluster Loading required package: survival Loading required package: splines Loading required package: annaffy Loading required package: KEGG Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: hu6800 Error: processing vignette 'tr_2004_03.Rnw' failed with diagnostics: chunk 10 Error in .Object@scores[a, ] <- alpha[a] * scaled.performance + (1 - alpha[a]) * : nothing to replace with In addition: Warning messages: 1: In min(v) : no non-missing arguments to min; returning Inf 2: In max(v) : no non-missing arguments to max; returning -Inf 3: In min(v) : no non-missing arguments to min; returning Inf 4: In max(v) : no non-missing arguments to max; returning -Inf Execution halted