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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 225/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
snapCGH1.5.0John MarioniLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | [ OK ] | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: snapCGH |
Version: 1.5.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=snapCGH.buildbin-libdir snapCGH_1.5.0.tar.gz |
RetCode: 0 |
Time: 26.4 seconds |
Status: OK |
PackageFile: snapCGH_1.5.0.zip |
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/snapCGH.buildbin-libdir Using auto-selected zip options ' snapCGH-HELP=ziponly' ---------- Making package snapCGH ------------ adding build stamp to DESCRIPTION making DLL ... making optimizer.d from optimizer.c gcc -IE:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c optimizer.c -o optimizer.o windres -I E:/biocbld/bbs-2.1-bioc/R/include -i snapCGH_res.rc -o snapCGH_res.o gcc -shared -s -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o -LE:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help Note: unmatched right brace in 'SegList' on or after line 29 Note: unmatched right brace in 'SegList.Rd' on or after line 29 Note: unmatched right brace in 'find.param.one' on or after line 18 Note: unmatched right brace in 'find.param.one.Rd' on or after line 18 Note: unmatched right brace in 'non.zero.length.distr.non.tiled' on or after line 9 Note: unmatched right brace in 'non.zero.length.distr.non.tiled.Rd' on or after line 9 Note: unmatched right brace in 'processCGH' on or after line 44 Note: unmatched right brace in 'processCGH.Rd' on or after line 44 >>> Building/Updating help pages for package 'snapCGH' Formats: text html latex example chm IDProbes text html latex chm LargeDataObject text html latex example chm SegList text html latex chm Viterbi.five text html latex chm Viterbi.four text html latex chm Viterbi.three text html latex chm Viterbi.two text html latex chm cbind text html latex chm chrominfo.Mb text html latex chm compareSegmentations text html latex chm convert.output text html latex example chm dim text html latex example chm dimnames text html latex chm filter text html latex chm find.param.five text html latex chm find.param.four text html latex chm find.param.one text html latex chm find.param.three text html latex chm find.param.two text html latex chm findBreakPoints text html latex chm fit.model text html latex chm genomePlot text html latex example chm heatmapGenome text html latex example chm imputeMissingValues text html latex chm log2ratios text html latex chm mergeStates text html latex chm non.zero.length.distr.non.tiled text html latex chm non.zero.length.distr.tiled text html latex chm nudSegmentation text html latex chm plotSegmentedGenome text html latex example chm processCGH text html latex chm read.clonesinfo text html latex chm readPositionalInfo text html latex chm removeByWeights text html latex chm runBioHMM text html latex chm runDNAcopy text html latex chm runGLAD text html latex chm runHMM text html latex chm runPicard text html latex chm sim.structure text html latex example chm subsetting text html latex example chm zero.length.distr.non.tiled text html latex chm zero.length.distr.tiled text html latex chm zoomChromosome text html latex chm zoomGenome text html latex chm zipping help files Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2056\snapCGH\chm\snapCGH.chm Compile time: 0 minutes, 1 second 46 Topics 179 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2056\snapCGH\chm\snapCGH.chm, 67,762 bytes Compression decreased file by 88,088 bytes. preparing package snapCGH for lazy loading Loading required package: limma Loading required package: tilingArray Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: RColorBrewer Loading required package: grid Loading required package: strucchange Loading required package: zoo Attaching package: 'zoo' The following object(s) are masked from package:base : rapply Loading required package: sandwich Loading required package: vsn Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: geneplotter Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: lattice KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: pixmap Loading required package: DNAcopy Attaching package: 'DNAcopy' The following object(s) are masked from package:tilingArray : segment Loading required package: GLAD Loading required package: aws Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: cluster Loading required package: aCGH Loading required package: multtest Loading required package: sma Attaching package: 'aCGH' The following object(s) are masked from package:stats : heatmap adding MD5 sums packaged installation of package 'snapCGH' as snapCGH_1.5.0.zip * DONE (snapCGH)