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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 185/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
rama1.9.0Raphael GottardoLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: rama |
Version: 1.9.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check rama_1.9.0.tar.gz |
RetCode: 0 |
Time: 78.9 seconds |
Status: OK |
CheckDir: rama.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/rama.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'rama/DESCRIPTION' ... OK * this is package 'rama' version '1.9.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'rama' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating rama-Ex.R ... OK * checking examples ... OK * creating rama-manual.tex ... OK * checking rama-manual.tex ... OK
rama.Rcheck/00install.out:
* Installing *source* package 'rama' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c estimation_slice.c -o estimation_slice.o estimation_slice.c: In function `mcmc_shift': estimation_slice.c:113: warning: unused variable `lambda_eps1_new' estimation_slice.c:113: warning: unused variable `lambda_eps2_new' estimation_slice.c:114: warning: unused variable `l_epsilon' estimation_slice.c:114: warning: unused variable `l_epsilon_new' estimation_slice.c:115: warning: unused variable `dens_epsilon' estimation_slice.c:115: warning: unused variable `dens_epsilon_new' estimation_slice.c:116: warning: unused variable `SSR1' estimation_slice.c:116: warning: unused variable `SSR2' estimation_slice.c:116: warning: unused variable `SS12' estimation_slice.c:117: warning: unused variable `pi' estimation_slice.c:121: warning: unused variable `SSeps_sd' estimation_slice.c:122: warning: unused variable `SSeps_sd_new' estimation_slice.c: In function `slice_sampling_lambda_eps': estimation_slice.c:484: warning: suggest parentheses around comparison in operand of & estimation_slice.c:493: warning: suggest parentheses around comparison in operand of & gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o ex_estimation_slice.c: In function `mcmc': ex_estimation_slice.c:112: warning: unused variable `pi' ex_estimation_slice.c:119: warning: unused variable `dens_t' ex_estimation_slice.c:119: warning: unused variable `dens_t_new' ex_estimation_slice.c:137: warning: unused variable `sum_res1' ex_estimation_slice.c:138: warning: unused variable `sum_res2' ex_estimation_slice.c:143: warning: unused variable `old_b' ex_estimation_slice.c:144: warning: unused variable `old_a' gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c mean.sd.c -o mean.sd.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c reorder.c -o reorder.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c util.c -o util.o util.c: In function `qr_solve': util.c:570: warning: implicit declaration of function `dqrdc2_' util.c:585: warning: implicit declaration of function `dqrcf_' util.c:549: warning: unused variable `vmax' util.c: In function `inverse': util.c:608: warning: unused variable `j' util.c: In function `product_mat_vec': util.c:655: warning: unused variable `k' util.c: In function `slice_sampling_a': util.c:752: warning: suggest parentheses around comparison in operand of | util.c:752: warning: suggest parentheses around comparison in operand of & util.c:759: warning: suggest parentheses around comparison in operand of & util.c:766: warning: suggest parentheses around comparison in operand of & util.c:736: warning: unused variable `v' util.c: In function `slice_sampling_b': util.c:826: warning: suggest parentheses around comparison in operand of | util.c:826: warning: suggest parentheses around comparison in operand of & util.c:833: warning: suggest parentheses around comparison in operand of & util.c:840: warning: suggest parentheses around comparison in operand of & util.c:809: warning: unused variable `v' util.c: In function `slice_sampling_b2': util.c:890: warning: suggest parentheses around comparison in operand of & util.c:898: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_a2': util.c:945: warning: suggest parentheses around comparison in operand of & util.c:953: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_rho': util.c:999: warning: suggest parentheses around comparison in operand of | util.c:999: warning: suggest parentheses around comparison in operand of & util.c:1006: warning: suggest parentheses around comparison in operand of & util.c:1013: warning: suggest parentheses around comparison in operand of & util.c:983: warning: unused variable `v' util.c: In function `slice_sampling_rho2': util.c:1058: warning: suggest parentheses around comparison in operand of & util.c:1067: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_shift': util.c:1142: warning: suggest parentheses around comparison in operand of | util.c:1142: warning: suggest parentheses around comparison in operand of & util.c:1149: warning: suggest parentheses around comparison in operand of & util.c:1156: warning: suggest parentheses around comparison in operand of & util.c:1123: warning: unused variable `v' util.c: In function `slice_sampling_shift2': util.c:1223: warning: suggest parentheses around comparison in operand of & util.c:1231: warning: suggest parentheses around comparison in operand of & util.c:1205: warning: unused variable `v' util.c: In function `slice_sampling_p': util.c:1371: warning: suggest parentheses around comparison in operand of & util.c:1379: warning: suggest parentheses around comparison in operand of & gcc -std=gnu99 -shared -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** help Note: unmatched right brace in 'arrange.row' on or after line 23 Note: unmatched right brace in 'arrange.row' on or after line 27 Note: unmatched right brace in 'est.shift' on or after line 76 Note: unmatched right brace in 'fit.model' on or after line 95 Note: unmatched right brace in 'ls.effect' on or after line 43 Note: unmatched right brace in 'ratio.plot' on or after line 20 Note: unmatched right brace in 'ratio.plot' on or after line 24 Note: unmatched right brace in 'weight.plot' on or after line 26 Note: unmatched right brace in 'weight.plot' on or after line 30 >>> Building/Updating help pages for package 'rama' Formats: text html latex example arrange.row text html latex example est.shift text html latex example fit.model text html latex example hiv text html latex is.row.na text html latex example ls.effect text html latex example mat.mean text html latex example ratio.plot text html latex example weight.plot text html latex example ** building package indices ... * DONE (rama)