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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 183/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
quantsmooth1.3.2Jan OostingLast Changed Date: 2007-07-26 08:38:44 -0700 Last Changed Rev: 25975 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: quantsmooth |
Version: 1.3.2 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check quantsmooth_1.3.2.tar.gz |
RetCode: 0 |
Time: 100.9 seconds |
Status: OK |
CheckDir: quantsmooth.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/quantsmooth.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'quantsmooth/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'quantsmooth' version '1.3.2' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'quantsmooth' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lengthChromosome: no visible binding for global variable 'chrom.bands' paintCytobands: no visible binding for global variable 'chrom.bands' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating quantsmooth-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating quantsmooth-manual.tex ... OK * checking quantsmooth-manual.tex ... OK
quantsmooth.Rcheck/00install.out:
* Installing *source* package 'quantsmooth' ... ** R ** data ** inst ** help >>> Building/Updating help pages for package 'quantsmooth' Formats: text html latex example Chromosome14 text html latex drawSimpleChrom text html latex example getChangedIdx text html latex getChangedRegions text html latex example getLambdaMin text html latex example lengthChromosome text html latex example numericCHR text html latex example paintCytobands text html latex example plotChromosome text html latex plotSmoothed text html latex example prepareGenomePlot text html latex quantsmooth text html latex example quantsmooth.cv text html latex example quantsmooth.seg text html latex example scaleto text html latex ** building package indices ... * DONE (quantsmooth)