Back to the "Multiple platform build/check report"

IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 180/247HostnameOSArchBUILDCHECKBUILD BIN

prism

0.1.1

Raphael Gottardo
Last Changed Date: 2007-05-11 21:56:41 -0700
Last Changed Rev: 24616
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  ERROR skipped
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386 [ OK ] WARNINGS  OK 
Package: prism
Version: 0.1.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build prism
RetCode: 0
Time: 16.7 seconds
Status: OK
PackageFile: prism_0.1.1.tar.gz

Command output

* checking for file 'prism/DESCRIPTION' ... OK
* preparing 'prism':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'prism' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c bisegment.c -o bisegment.o
bisegment.c: In function 'R_link_bisegment':
bisegment.c:144: warning: unused variable 'gamma_start'
bisegment.c:136: warning: unused variable 'bj'
bisegment.c:136: warning: unused variable 'bi'
bisegment.c: In function 'bisegment':
bisegment.c:326: warning: unused variable 'j_end'
bisegment.c:326: warning: unused variable 'j_start'
bisegment.c:325: warning: unused variable 'i_end'
bisegment.c:325: warning: unused variable 'i_start'
bisegment.c:321: warning: unused variable 'stop_criteria_M'
bisegment.c:314: warning: unused variable 'l'
bisegment.c:314: warning: unused variable 'jjj'
bisegment.c:314: warning: unused variable 'iii'
bisegment.c:314: warning: unused variable 'kk'
bisegment.c: In function 'initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_w':
bisegment.c:874: warning: unused variable 'sum_res'
bisegment.c:873: warning: unused variable 'nb_pixel'
bisegment.c: In function 'compute_difference':
bisegment.c:887: warning: unused variable 'i'
bisegment.c: In function 'compute_uncertainty':
bisegment.c:904: warning: unused variable 'nb_flagged'
bisegment.c:901: warning: unused variable 'jjj'
bisegment.c:901: warning: unused variable 'iii'
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1000: warning: unused variable 'nb_pix'
bisegment.c:991: warning: unused variable 'rho_new'
bisegment.c:990: warning: unused variable 'log_like_rho_new'
bisegment.c:989: warning: unused variable 'log_like_rho'
bisegment.c:988: warning: unused variable 'nb_spot'
bisegment.c:982: warning: unused variable 'l'
bisegment.c:982: warning: unused variable 'jjj'
bisegment.c:982: warning: unused variable 'iii'
bisegment.c:981: warning: unused variable 'countrho'
bisegment.c: In function 'slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'bisegment':
bisegment.c:460: warning: control reaches end of non-void function
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c find_grid.c -o find_grid.o
find_grid.c: In function 'find_grid':
find_grid.c:12: warning: 'index_min' may be used uninitialized in this function
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:623: warning: implicit declaration of function 'dqrdc2_'
util.c:638: warning: implicit declaration of function 'dqrcf_'
util.c:602: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:661: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:708: warning: unused variable 'k'
util.c: In function 'slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable 'v'
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: 'J' is used uninitialized in this function
util.c:880: warning: 'K' is used uninitialized in this function
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o prism.so bisegment.o find_grid.o util.o   -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c bisegment.c -o bisegment.o
bisegment.c: In function 'R_link_bisegment':
bisegment.c:144: warning: unused variable 'gamma_start'
bisegment.c:136: warning: unused variable 'bj'
bisegment.c:136: warning: unused variable 'bi'
bisegment.c: In function 'bisegment':
bisegment.c:326: warning: unused variable 'j_end'
bisegment.c:326: warning: unused variable 'j_start'
bisegment.c:325: warning: unused variable 'i_end'
bisegment.c:325: warning: unused variable 'i_start'
bisegment.c:321: warning: unused variable 'stop_criteria_M'
bisegment.c:314: warning: unused variable 'l'
bisegment.c:314: warning: unused variable 'jjj'
bisegment.c:314: warning: unused variable 'iii'
bisegment.c:314: warning: unused variable 'kk'
bisegment.c: In function 'initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'up_date_w':
bisegment.c:874: warning: unused variable 'sum_res'
bisegment.c:873: warning: unused variable 'nb_pixel'
bisegment.c: In function 'compute_difference':
bisegment.c:887: warning: unused variable 'i'
bisegment.c: In function 'compute_uncertainty':
bisegment.c:904: warning: unused variable 'nb_flagged'
bisegment.c:901: warning: unused variable 'jjj'
bisegment.c:901: warning: unused variable 'iii'
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1000: warning: unused variable 'nb_pix'
bisegment.c:991: warning: unused variable 'rho_new'
bisegment.c:990: warning: unused variable 'log_like_rho_new'
bisegment.c:989: warning: unused variable 'log_like_rho'
bisegment.c:988: warning: unused variable 'nb_spot'
bisegment.c:982: warning: unused variable 'l'
bisegment.c:982: warning: unused variable 'jjj'
bisegment.c:982: warning: unused variable 'iii'
bisegment.c:981: warning: unused variable 'countrho'
bisegment.c: In function 'slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function 'bisegment':
bisegment.c:460: warning: control reaches end of non-void function
bisegment.c: In function 'bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c find_grid.c -o find_grid.o
find_grid.c: In function 'find_grid':
find_grid.c:12: warning: 'index_min' may be used uninitialized in this function
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:623: warning: implicit declaration of function 'dqrdc2_'
util.c:638: warning: implicit declaration of function 'dqrcf_'
util.c:602: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:661: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:708: warning: unused variable 'k'
util.c: In function 'slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable 'v'
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_lxi':
util.c:871: warning: 'J' is used uninitialized in this function
util.c:880: warning: 'K' is used uninitialized in this function
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o prism.so bisegment.o find_grid.o util.o   -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** preparing package for lazy loading
Loading required package: EBImage
Creating a new generic function for "summary" in "prism"
** help
 >>> Building/Updating help pages for package 'prism'
     Formats: text html latex example 
  extractExpression                 text    html    latex   example
  formImagePair                     text    html    latex   example
  getGrid                           text    html    latex   example
  like                              text    html    latex
  plotEstimates                     text    html    latex   example
  prism                             text    html    latex   example
  prismEstimates-class              text    html    latex   example
  prismGrid-class                   text    html    latex   example
  prismImage-class                  text    html    latex   example
** building package indices ...
* DONE (prism)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'prism_0.1.1.tar.gz'