Package: plgem

Version: 1.9.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build plgem

RetCode: 1

Time: 16.3 seconds

Status: ERROR

PackageFile: None

* checking for file 'plgem/DESCRIPTION' ... OK
* preparing 'plgem':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst292899130


---------- Making package plgem ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'plgem'
     Formats: text html latex example chm 
  LPSeset                           text    html    latex   example chm
  plgem.deg                         text    html    latex   example chm
  plgem.fit                         text    html    latex   example chm
  plgem.obsStn                      text    html    latex   example chm
  run.plgem                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\plgem\chm\plgem.chm





Compile time: 0 minutes, 0 seconds

6	Topics

25	Local links

5	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\plgem\chm\plgem.chm, 25,090 bytes

Compression decreased file by 2,044 bytes.

  adding MD5 sums

* DONE (plgem)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: MASS

Error: processing vignette 'plgem.Rnw' failed with diagnostics:
 chunk 1 (label=PLGEMwrapper) 
Error in run.plgem(esdata = LPSeset) : 
  At least 2 conditions are needed in object esdata for function run.plgem
Execution halted