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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 167/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
pcaMethods1.13.2Wolfram StackliesLast Changed Date: 2007-06-14 23:46:22 -0700 Last Changed Rev: 25394 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | ERROR | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: pcaMethods |
Version: 1.13.2 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check pcaMethods_1.13.2.tar.gz |
RetCode: 0 |
Time: 1693.5 seconds |
Status: WARNINGS |
CheckDir: pcaMethods.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/pcaMethods.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'pcaMethods/DESCRIPTION' ... OK * this is package 'pcaMethods' version '1.13.2' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'pcaMethods' can be installed ... WARNING Found the following significant warnings: WARNING: omitting pointless dependence on 'R' without a version requirement See '/extra/loc/biocbuild/bbs-2.1-bioc/meat/pcaMethods.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE kEstimateFast: no visible binding for global variable 'allVariables' nni: no visible global function definition for 'exprs' pca: no visible global function definition for 'exprs' prep: no visible global function definition for 'exprs' robustSvd: no visible binding for global variable 'verbose' svdPca: no visible binding for global variable 'verbose' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating pcaMethods-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating pcaMethods-manual.tex ... OK * checking pcaMethods-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/pcaMethods.Rcheck/00check.log for details
pcaMethods.Rcheck/00install.out:
WARNING: omitting pointless dependence on 'R' without a version requirement * Installing *source* package 'pcaMethods' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: MASS Loading required package: pls Attaching package: 'pls' The following object(s) are masked from package:stats : loadings Creating a new generic function for "print" in "pcaMethods" Creating a new generic function for "summary" in "pcaMethods" Creating a new generic function for "fitted" in "pcaMethods" ** help Note: unmatched right brace in 'nlpca' on or after line 60 >>> Building/Updating help pages for package 'pcaMethods' Formats: text html latex example Q2 text html latex example asExprSet text html latex bpca text html latex example checkData text html latex class.nlpcaNet text html latex class.nniRes text html latex class.pcaRes text html latex fitted.pcaRes text html latex helix text html latex kEstimate text html latex example kEstimateFast text html latex example llsImpute text html latex example metaboliteData text html latex metaboliteDataComplete text html latex nipalsPca text html latex example nlpca text html latex example nni text html latex example pca text html latex example plotPcs text html latex example plotR2 text html latex ppca text html latex example prep text html latex example robustPca text html latex example robustSvd text html latex example slplot text html latex example svdImpute text html latex example svdPca text html latex example ** building package indices ... * DONE (pcaMethods)