Package: pairseqsim

Version: 1.9.3

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build pairseqsim

RetCode: 1

Time: 10.1 seconds

Status: ERROR

PackageFile: None

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c align.c -o align.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c basic.c -o basic.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c callalign.c -o callalign.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pairseqsim.so align.o basic.o callalign.o   -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c align.c -o align.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c basic.c -o basic.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c callalign.c -o callalign.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pairseqsim.so align.o basic.o callalign.o   -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** help
Note: unmatched right brace in 'EPAM110' on or after line 80
Note: unmatched right brace in 'Submatrix-class' on or after line 14
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example 
  AAAlignment-class                 text    html    latex   example
  AAAlphabet-class                  text    html    latex   example
  AASequence-class                  text    html    latex   example
  AASequence                        text    html    latex   example
  AASequenceList-class              text    html    latex   example
  EPAM110                           text    html    latex   example
  Submatrix-class                   text    html    latex
  listdist-methods                  text    html    latex
  readFasta-methods                 text    html    latex   example
  salign-methods                    text    html    latex   example
  sequlist                          text    html    latex   example
  testalign-methods                 text    html    latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... ERROR
Creating a new generic function for "levels" in "pairseqsim"
Creating a new generic function for "frequency" in "pairseqsim"
Creating a new generic function for "summary" in "pairseqsim"
 Refusing to claim no (or even less memmory ... !