Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 151/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
nem1.7.0Florian MarkowetzLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: nem |
Version: 1.7.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check nem_1.7.0.tar.gz |
RetCode: 0 |
Time: 71.3 seconds |
Status: OK |
CheckDir: nem.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/nem.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'nem/DESCRIPTION' ... OK * this is package 'nem' version '1.7.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'nem' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE moduleNetwork.aux : clusterData: no visible global function definition for 'pam' moduleNetwork.aux : clusterData: no visible global function definition for 'silhouette' nemModelSelection : infer: no visible binding for global variable 'lambda' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'moduleNetwork': print.ModuleNetwork S3 methods shown with full name in documentation object 'pairwise.posterior': print.pairwise S3 methods shown with full name in documentation object 'plot.effects': plot.effects S3 methods shown with full name in documentation object 'plot.nem': plot.nem S3 methods shown with full name in documentation object 'score': print.score S3 methods shown with full name in documentation object 'triples.posterior': print.triples The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * creating nem-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating nem-manual.tex ... OK * checking nem-manual.tex ... OK
nem.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/nem.Rcheck ---------- Making package nem ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'nem' Formats: text html latex example chm BFSlevel text html latex example chm BoutrosRNAi2002 text html latex example chm FULLmLL text html latex example chm SCCgraph text html latex example chm enumerate.models text html latex example chm local.model.prior text html latex example chm mLL text html latex example chm moduleNetwork text html latex example chm nem text html latex example chm nem.cont.preprocess text html latex example chm nem.discretize text html latex example chm nemModelSelection text html latex example chm network.AIC text html latex example chm pairwise.posterior text html latex example chm plot.effects text html latex example chm plot.nem text html latex chm score text html latex example chm subsets text html latex example chm transitive.closure text html latex example chm transitive.reduction text html latex example chm triples.posterior text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\nem.Rcheck\00_pkg_src\nem\chm\nem.chm Compile time: 0 minutes, 0 seconds 22 Topics 93 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\nem.Rcheck\00_pkg_src\nem\chm\nem.chm, 46,488 bytes Compression decreased file by 43,657 bytes. preparing package nem for lazy loading Loading required package: e1071 Loading required package: class Loading required package: graph Loading required package: Rgraphviz Loading required package: RBGL Attaching package: 'RBGL' The following object(s) are masked from package:e1071 : extractPath Loading required package: time adding MD5 sums * DONE (nem)