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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 134/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
makePlatformDesign1.1.3Benilton CarvalhoLast Changed Date: 2007-08-06 23:20:53 -0700 Last Changed Rev: 26204 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: makePlatformDesign |
Version: 1.1.3 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check makePlatformDesign_1.1.3.tar.gz |
RetCode: 0 |
Time: 143.2 seconds |
Status: OK |
CheckDir: makePlatformDesign.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/makePlatformDesign.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'makePlatformDesign/DESCRIPTION' ... OK * this is package 'makePlatformDesign' version '1.1.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'makePlatformDesign' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE makePDpackage.old: possible error in makeSNPenv(filename, seqfile, annotfile, textCDF): unused argument(s) (textCDF) readndfplex: no visible binding for global variable 'PROBE_CLASS' writePackage: no visible binding for global variable 'verbose' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating makePlatformDesign-Ex.R ... OK * checking examples ... OK * creating makePlatformDesign-manual.tex ... OK * checking makePlatformDesign-manual.tex ... OK
makePlatformDesign.Rcheck/00install.out:
* Installing *source* package 'makePlatformDesign' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c matchprobes.c -o matchprobes.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c strutils.c -o strutils.o gcc -std=gnu99 -shared -L/usr/local/lib -o makePlatformDesign.so matchprobes.o strutils.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: affyio Loading required package: oligo Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: splines Loading required package: RSQLite Loading required package: DBI Loading required package: BufferedMatrix Loading required package: BufferedMatrixMethods Loading required package: preprocessCore Loading required package: AnnotationDbi Loading required package: affxparser This is the oligo package ** help >>> Building/Updating help pages for package 'makePlatformDesign' Formats: text html latex example makePDpackage text html latex example makePlatformDesign-internal text html latex ** building package indices ... * DONE (makePlatformDesign)