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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 123/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
limmaGUI1.13.0Keith SatterleyLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: limmaGUI |
Version: 1.13.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check limmaGUI_1.13.0.tar.gz |
RetCode: 0 |
Time: 70.8 seconds |
Status: OK |
CheckDir: limmaGUI.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/limmaGUI.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'limmaGUI/DESCRIPTION' ... OK * this is package 'limmaGUI' version '1.13.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'limmaGUI' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE AboutNormalization: no visible binding for global variable '.limmaGUIglobals' ChooseContrastsParameterization: no visible binding for global variable 'limmaGUIenvironment' ChooseContrastsParameterization: no visible binding for global variable 'ParameterizationNamesVec' ChooseContrastsParameterization: no visible binding for global variable 'parameterizationIndex' ChooseContrastsParameterization: no visible binding for global variable '.limmaGUIglobals' ChooseContrastsParameterization : onOK: no visible binding for global variable '.limmaGUIglobals' ChooseContrastsParameterization : onCancel: no visible binding for global variable '.limmaGUIglobals' ChooseContrastsParameterization : <anonymous>: no visible binding for global variable '.limmaGUIglobals' chooseDir: no visible binding for global variable '.limmaGUIglobals' ChooseEbayesStatistic: no visible binding for global variable '.limmaGUIglobals' ChooseEbayesStatistic : onOK: no visible binding for global variable '.limmaGUIglobals' ChooseEbayesStatistic : onCancel: no visible binding for global variable '.limmaGUIglobals' ChooseEbayesStatistic : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ChooseParameterization: no visible binding for global variable 'limmaGUIenvironment' ChooseParameterization: no visible binding for global variable '.limmaGUIglobals' ChooseParameterization : onOK: no visible binding for global variable '.limmaGUIglobals' ChooseParameterization : onCancel: no visible binding for global variable '.limmaGUIglobals' ChooseParameterization : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ChoosePlotSymbolByClicking: no visible binding for global variable '.limmaGUIglobals' ChoosePlotSymbolByClicking : LeftClick: no visible binding for global variable '.limmaGUIglobals' ChoosePlotSymbolByClicking : onCancel: no visible binding for global variable '.limmaGUIglobals' ChoosePlotSymbolByClicking : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ChooseSpotType: no visible binding for global variable '.limmaGUIglobals' ChooseSpotType : onOK: no visible binding for global variable '.limmaGUIglobals' ChooseSpotType : onCancel: no visible binding for global variable '.limmaGUIglobals' ChooseSpotType : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ComputeContrasts: no visible binding for global variable 'limmaGUIenvironment' ComputeContrasts: no visible binding for global variable '.limmaGUIglobals' ComputeLinearModelFit: no visible binding for global variable 'limmaGUIenvironment' ComputeLinearModelFit: no visible binding for global variable '.limmaGUIglobals' ComputeLinearModelFit : GetDupCor: no visible binding for global variable '.limmaGUIglobals' ComputeLinearModelFit : GetDupCor : onOK: no visible binding for global variable '.limmaGUIglobals' ComputeLinearModelFit : GetDupCor : onCancel: no visible binding for global variable '.limmaGUIglobals' ComputeLinearModelFit : GetDupCor : <anonymous>: no visible binding for global variable '.limmaGUIglobals' CreateNewParameterization: no visible binding for global variable 'limmaGUIenvironment' CreateNewParameterization: no visible binding for global variable '.limmaGUIglobals' CreateTreeAndList: no visible binding for global variable 'limmaGUIenvironment' CreateTreeAndList: no visible binding for global variable '.limmaGUIglobals' DeleteContrastsParameterization: no visible binding for global variable 'limmaGUIenvironment' DeleteContrastsParameterization: no visible binding for global variable '.limmaGUIglobals' DeleteParameterization: no visible binding for global variable 'limmaGUIenvironment' DeleteParameterization: no visible binding for global variable '.limmaGUIglobals' DupCorBoxPlot: no visible binding for global variable 'limmaGUIenvironment' DupCorBoxPlot: no visible binding for global variable '.limmaGUIglobals' ebayesBoxPlots: no visible binding for global variable 'limmaGUIenvironment' ebayesBoxPlots: no visible binding for global variable '.limmaGUIglobals' ebayesBoxPlots: no visible binding for global variable 'limmaDataSetNameText' evalRcode: no visible binding for global variable '.limmaGUIglobals' evalRcode : runOverall: no visible binding for global variable '.limmaGUIglobals' evalRcode : runOverall: no visible binding for global variable 'limmaGUIenvironment' evalRcode : MakeLimmaGUIMenu: no visible global function definition for 'GetMenuName' evalRcode : MakeLimmaGUIMenu: no visible global function definition for 'addMenuItem' ExportAvalues: no visible binding for global variable 'limmaGUIenvironment' ExportHTMLreport: no visible binding for global variable 'limmaGUIenvironment' ExportHTMLreport: no visible binding for global variable '.limmaGUIglobals' ExportMvalues: no visible binding for global variable 'limmaGUIenvironment' GetBackgroundCorrectionMethod: no visible binding for global variable '.limmaGUIglobals' GetBackgroundCorrectionMethod: no visible binding for global variable 'limmaGUIenvironment' GetBackgroundCorrectionMethod : onOK: no visible binding for global variable '.limmaGUIglobals' GetBackgroundCorrectionMethod : onOK: no visible binding for global variable 'limmaGUIenvironment' GetBackgroundCorrectionMethod : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetBetweenArrayNormalizationMethod: no visible binding for global variable '.limmaGUIglobals' GetBetweenArrayNormalizationMethod: no visible binding for global variable 'limmaGUIenvironment' GetBetweenArrayNormalizationMethod : onOK: no visible binding for global variable 'limmaGUIenvironment' GetBetweenArrayNormalizationMethod : onOK: no visible binding for global variable '.limmaGUIglobals' GetBetweenArrayNormalizationMethod : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetCoef: no visible binding for global variable 'limmaGUIenvironment' GetCoef: no visible binding for global variable '.limmaGUIglobals' GetCoef : onOK: no visible binding for global variable '.limmaGUIglobals' GetCoef : onCancel: no visible binding for global variable '.limmaGUIglobals' GetCoef : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetComponentsToExportInHTMLreport: no visible binding for global variable 'limmaGUIenvironment' GetComponentsToExportInHTMLreport: no visible binding for global variable '.limmaGUIglobals' GetComponentsToExportInHTMLreport : onOK: no visible binding for global variable '.limmaGUIglobals' GetComponentsToExportInHTMLreport : onCancel: no visible binding for global variable '.limmaGUIglobals' GetComponentsToExportInHTMLreport : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetContrastsParameterizationName: no visible binding for global variable '.limmaGUIglobals' GetContrastsParameterizationName : onOK: no visible binding for global variable '.limmaGUIglobals' GetContrastsParameterizationName : onCancel: no visible binding for global variable '.limmaGUIglobals' GetContrastsParameterizationName : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetContrastsParameterizationNames: no visible binding for global variable 'limmaGUIenvironment' GetDEcutoff: no visible binding for global variable '.limmaGUIglobals' GetDEcutoff : onOK: no visible binding for global variable '.limmaGUIglobals' GetDEcutoff : onCancel: no visible binding for global variable '.limmaGUIglobals' GetDEcutoff : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts: no visible binding for global variable 'limmaGUIenvironment' GetDesignOrContrasts: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : GetDesignOrContrastsTable: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : GetDesignOrContrastsTable : onOK: no visible binding for global variable 'limmaGUIenvironment' GetDesignOrContrasts : GetDesignOrContrastsTable : onOK: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : GetDesignOrContrastsTable : onCancel: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : GetDesignOrContrastsTable : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : OnAdvanced: no visible binding for global variable 'limmaGUIenvironment' GetDesignOrContrasts : OnAdvanced: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : onOK: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : onCancel: no visible binding for global variable '.limmaGUIglobals' GetDesignOrContrasts : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetGeneLabelsOptions: no visible binding for global variable '.limmaGUIglobals' GetGeneLabelsOptions : onOK: no visible binding for global variable '.limmaGUIglobals' GetGeneLabelsOptions : onCancel: no visible binding for global variable '.limmaGUIglobals' GetGeneLabelsOptions : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetGenePixFlagWeightings: no visible binding for global variable '.limmaGUIglobals' GetGenePixFlagWeightings : onOK: no visible binding for global variable '.limmaGUIglobals' GetGenePixFlagWeightings : onCancel: no visible binding for global variable '.limmaGUIglobals' GetGenePixFlagWeightings : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetImageAnalysisColumnHeadings: no visible binding for global variable '.limmaGUIglobals' GetImageAnalysisColumnHeadings : onOK: no visible binding for global variable '.limmaGUIglobals' GetImageAnalysisColumnHeadings : onCancel: no visible binding for global variable '.limmaGUIglobals' GetImageAnalysisColumnHeadings : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetImageProcessingFileType: no visible binding for global variable '.limmaGUIglobals' GetImageProcessingFileType: no visible binding for global variable 'limmaGUIenvironment' GetImageProcessingFileType : onOther: no visible binding for global variable '.limmaGUIglobals' GetImageProcessingFileType : onOK: no visible binding for global variable '.limmaGUIglobals' GetImageProcessingFileType : onCancel: no visible binding for global variable '.limmaGUIglobals' GetImageProcessingFileType : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngParams: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngParams : onOK: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngParams : onCancel: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngParams : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngX11Params: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngX11Params : onOK: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngX11Params : onCancel: no visible binding for global variable '.limmaGUIglobals' GetJpegOrPngX11Params : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetlimmaDataSetName: no visible binding for global variable 'limmaGUIenvironment' GetlimmaDataSetName: no visible binding for global variable '.limmaGUIglobals' GetlimmaDataSetName : onOK: no visible binding for global variable 'limmaGUIenvironment' GetlimmaDataSetName : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetlmFitMethod: no visible binding for global variable '.limmaGUIglobals' GetlmFitMethod: no visible binding for global variable 'limmaGUIenvironment' GetlmFitMethod : onOK: no visible binding for global variable 'limmaGUIenvironment' GetlmFitMethod : onOK: no visible binding for global variable '.limmaGUIglobals' GetlmFitMethod : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetLowessType: no visible binding for global variable '.limmaGUIglobals' GetLowessType : onOK: no visible binding for global variable '.limmaGUIglobals' GetLowessType : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetNEWxlim: no visible binding for global variable '.limmaGUIglobals' GetNEWxlim : onOK: no visible binding for global variable '.limmaGUIglobals' GetNEWxlim : onCancel: no visible binding for global variable '.limmaGUIglobals' GetNEWxlim : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetNormexpOffsetValue: no visible binding for global variable '.limmaGUIglobals' GetNormexpOffsetValue : onOK: no visible binding for global variable '.limmaGUIglobals' GetNormexpOffsetValue : onCancel: no visible binding for global variable '.limmaGUIglobals' GetNormexpOffsetValue : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetNumParametersNoTargets: no visible binding for global variable 'limmaGUIenvironment' GetNumParametersNoTargets: no visible binding for global variable '.limmaGUIglobals' GetNumParametersNoTargets : onOK: no visible binding for global variable 'limmaGUIenvironment' GetNumParametersNoTargets : onOK: no visible binding for global variable '.limmaGUIglobals' GetNumParametersNoTargets : onCancel: no visible binding for global variable '.limmaGUIglobals' GetNumParametersNoTargets : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetParameterizationName: no visible binding for global variable '.limmaGUIglobals' GetParameterizationName : onOK: no visible binding for global variable '.limmaGUIglobals' GetParameterizationName : onCancel: no visible binding for global variable '.limmaGUIglobals' GetParameterizationName : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetParameterNames: no visible binding for global variable 'limmaGUIenvironment' GetParametersAndOrContrasts: no visible binding for global variable 'limmaGUIenvironment' GetParametersAndOrContrasts: no visible binding for global variable '.limmaGUIglobals' GetParametersAndOrContrasts : onOK: no visible binding for global variable '.limmaGUIglobals' GetParametersAndOrContrasts : onCancel: no visible binding for global variable '.limmaGUIglobals' GetParametersAndOrContrasts : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetPlotLabels: no visible binding for global variable '.limmaGUIglobals' GetPlotLabels : onOK: no visible binding for global variable '.limmaGUIglobals' GetPlotLabels : onCancel: no visible binding for global variable '.limmaGUIglobals' GetPlotLabels : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetPlotSize: no visible binding for global variable '.limmaGUIglobals' GetPlotSize : onOK: no visible binding for global variable '.limmaGUIglobals' GetPlotSize : onCancel: no visible binding for global variable '.limmaGUIglobals' GetPlotSize : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetPlotTitle: no visible binding for global variable '.limmaGUIglobals' GetPlotTitle : onOK: no visible binding for global variable '.limmaGUIglobals' GetPlotTitle : onCancel: no visible binding for global variable '.limmaGUIglobals' GetPlotTitle : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetPValueCutoff: no visible binding for global variable '.limmaGUIglobals' GetPValueCutoff : onOK: no visible binding for global variable '.limmaGUIglobals' GetPValueCutoff : onCancel: no visible binding for global variable '.limmaGUIglobals' GetPValueCutoff : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetReducedDuplicateSpacing: no visible binding for global variable 'limmaGUIenvironment' GetSlideNum: no visible binding for global variable 'limmaGUIenvironment' GetSlideNum: no visible binding for global variable '.limmaGUIglobals' GetSlideNum : onOK: no visible binding for global variable '.limmaGUIglobals' GetSlideNum : onCancel: no visible binding for global variable '.limmaGUIglobals' GetSlideNum : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetSpotTypesForLinearModel: no visible binding for global variable 'limmaGUIenvironment' GetSpotTypesForLinearModel: no visible binding for global variable '.limmaGUIglobals' GetSpotTypesForLinearModel : onOK: no visible binding for global variable '.limmaGUIglobals' GetSpotTypesForLinearModel : onCancel: no visible binding for global variable '.limmaGUIglobals' GetSpotTypesForLinearModel : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetSpotTypesIncludedNames: no visible binding for global variable 'limmaGUIenvironment' GetWithinArrayNormalizationMethod: no visible binding for global variable '.limmaGUIglobals' GetWithinArrayNormalizationMethod: no visible binding for global variable 'limmaGUIenvironment' GetWithinArrayNormalizationMethod : onOK: no visible binding for global variable 'limmaGUIenvironment' GetWithinArrayNormalizationMethod : onOK: no visible binding for global variable '.limmaGUIglobals' GetWithinArrayNormalizationMethod : <anonymous>: no visible binding for global variable '.limmaGUIglobals' GetWtAreaParams: no visible binding for global variable '.limmaGUIglobals' GetWtAreaParams : onOK: no visible binding for global variable 'limmaGUIenvironment' GetWtAreaParams : onOK: no visible binding for global variable '.limmaGUIglobals' GetWtAreaParams : onCancel: no visible binding for global variable '.limmaGUIglobals' GetWtAreaParams : <anonymous>: no visible binding for global variable '.limmaGUIglobals' HeatDiagramDialog: no visible binding for global variable '.limmaGUIglobals' HeatDiagramDialog : onOK: no visible binding for global variable '.limmaGUIglobals' HeatDiagramDialog : onCancel: no visible binding for global variable '.limmaGUIglobals' HeatDiagramDialog : <anonymous>: no visible binding for global variable '.limmaGUIglobals' HeatDiagramPlot: no visible binding for global variable 'limmaGUIenvironment' HeatDiagramPlot: no visible binding for global variable '.limmaGUIglobals' HowManyDups: no visible binding for global variable 'limmaGUIenvironment' HowManyDups: no visible binding for global variable '.limmaGUIglobals' HowManyDups : onOK: no visible binding for global variable 'limmaGUIenvironment' HowManyDups : onOK: no visible binding for global variable '.limmaGUIglobals' HowManyDups : onCancel: no visible binding for global variable '.limmaGUIglobals' HowManyDups : <anonymous>: no visible binding for global variable '.limmaGUIglobals' HTMLplotUsingFunction: no visible binding for global variable '.HTML.file' HTMLplotUsingFunction: no visible binding for global variable 'gif' ImageArrayPlot: no visible binding for global variable 'limmaGUIenvironment' ImageArrayPlot: no visible binding for global variable '.limmaGUIglobals' ImageArrayPlotDialog: no visible binding for global variable 'limmaGUIenvironment' ImageArrayPlotDialog: no visible binding for global variable '.limmaGUIglobals' ImageArrayPlotDialog : onOK: no visible binding for global variable '.limmaGUIglobals' ImageArrayPlotDialog : onCancel: no visible binding for global variable '.limmaGUIglobals' ImageArrayPlotDialog : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ImportMA: no visible binding for global variable 'limmaGUIenvironment' ImportMA: no visible binding for global variable '.limmaGUIglobals' ImportMADialog: no visible binding for global variable '.limmaGUIglobals' ImportMADialog : onOK: no visible binding for global variable '.limmaGUIglobals' ImportMADialog : onCancel: no visible binding for global variable '.limmaGUIglobals' ImportMADialog : <anonymous>: no visible binding for global variable '.limmaGUIglobals' initGlobals: no visible binding for global variable 'limmaGUIenvironment' initGlobals: no visible binding for '<<-' assignment to 'NEOffsetDefault' initGlobals: no visible binding for global variable 'NEOffsetDefault' InitNewParameterization: no visible binding for global variable 'limmaGUIenvironment' InitNewParameterization: no visible binding for global variable '.limmaGUIglobals' limmaGUI: no visible binding for global variable 'limmaGUIenvironment' limmaGUI: no visible binding for global variable '.limmaGUIglobals' limmaGUI: possible error in Try(limmaGUIglobals$mainTreeHeight, 20): unused argument(s) (20) limmaGUI : <anonymous>: no visible binding for global variable '.limmaGUIglobals' LogOddsPlot: no visible binding for global variable 'limmaGUIenvironment' LogOddsPlot: no visible binding for global variable '.limmaGUIglobals' MAPlot: no visible binding for global variable 'limmaGUIenvironment' MAPlot: no visible binding for global variable '.limmaGUIglobals' MAPlotAvg: no visible binding for global variable 'limmaGUIenvironment' MAPlotAvg: no visible binding for global variable '.limmaGUIglobals' MAPlotAvg : plotAvgMA: no visible binding for global variable 'limmaGUIenvironment' MBoxPlot: no visible binding for global variable 'limmaGUIenvironment' MBoxPlot: no visible binding for global variable '.limmaGUIglobals' MBoxPlot : onOK: no visible binding for global variable '.limmaGUIglobals' MBoxPlot : onCancel: no visible binding for global variable '.limmaGUIglobals' MBoxPlot : <anonymous>: no visible binding for global variable '.limmaGUIglobals' MMPlot: no visible binding for global variable 'limmaGUIenvironment' MMPlot: no visible binding for global variable '.limmaGUIglobals' NewLimmaFile: no visible binding for global variable 'limmaGUIenvironment' NormalizeNow: no visible binding for global variable 'limmaGUIenvironment' NormalizeNow: no visible binding for global variable '.limmaGUIglobals' onDestroy: no visible binding for global variable 'limmaGUIenvironment' onExit: no visible binding for global variable 'limmaGUIenvironment' onExit: no visible binding for global variable '.limmaGUIglobals' OpenALimmaFile: no visible binding for global variable 'limmaGUIenvironment' OpenGALandTargetsandSpotTypesfiles : onOK: no visible binding for global variable 'limmaGUIenvironment' OpenGALFile: no visible binding for global variable 'limmaGUIenvironment' OpenSpotTypesFile: no visible binding for global variable 'limmaGUIenvironment' OpenTargetsFile: no visible binding for global variable 'limmaGUIenvironment' plotMAColorCoded: no visible binding for global variable 'limmaGUIenvironment' plotMAColorCoded: no visible binding for global variable '.limmaGUIglobals' PlotOptions: no visible binding for global variable '.limmaGUIglobals' PlotOptions : onOK: no visible binding for global variable '.limmaGUIglobals' PlotOptions : <anonymous>: no visible binding for global variable '.limmaGUIglobals' PrintTipGroupMAPlot: no visible binding for global variable 'limmaGUIenvironment' PrintTipGroupMAPlot: no visible binding for global variable '.limmaGUIglobals' QQTplot: no visible binding for global variable 'limmaGUIenvironment' QQTplot: no visible binding for global variable '.limmaGUIglobals' ReadImageProcessingFiles: no visible binding for global variable 'limmaGUIenvironment' ReadImageProcessingFiles: no visible binding for global variable '.limmaGUIglobals' SaveAsLimmaFile: no visible binding for global variable 'limmaGUIenvironment' SaveAsLimmaFile: no visible binding for global variable '.limmaGUIglobals' SaveLimmaFile: no visible binding for global variable 'limmaGUIenvironment' SaveLimmaFile: no visible binding for global variable '.limmaGUIglobals' SelectPlotSymbols: no visible binding for global variable '.limmaGUIglobals' SelectPlotSymbols : onBrowse: no visible binding for global variable '.limmaGUIglobals' SelectPlotSymbols : onOK: no visible binding for global variable '.limmaGUIglobals' SelectPlotSymbols : onCancel: no visible binding for global variable '.limmaGUIglobals' SelectPlotSymbols : <anonymous>: no visible binding for global variable '.limmaGUIglobals' SetLayoutParameters: no visible binding for global variable 'limmaGUIenvironment' SetLayoutParameters: no visible binding for global variable '.limmaGUIglobals' SetLayoutParameters : GetFromGAL: no visible binding for global variable 'limmaGUIenvironment' SetLayoutParameters : onOK: no visible binding for global variable 'limmaGUIenvironment' SetLayoutParameters : onOK: no visible binding for global variable '.limmaGUIglobals' SetLayoutParameters : onCancel: no visible binding for global variable '.limmaGUIglobals' SetLayoutParameters : <anonymous>: no visible binding for global variable '.limmaGUIglobals' SetWD: no visible binding for global variable '.limmaGUIglobals' showGAL: no visible binding for global variable 'limmaGUIenvironment' showGAL: no visible binding for global variable '.limmaGUIglobals' showTopTable: no visible binding for global variable 'limmaGUIenvironment' showTopTable: no visible binding for global variable '.limmaGUIglobals' showTopTable : onOK: no visible binding for global variable '.limmaGUIglobals' showTopTable : onCancel: no visible binding for global variable '.limmaGUIglobals' showTopTable : <anonymous>: no visible binding for global variable '.limmaGUIglobals' TclRequire: no visible binding for global variable '.limmaGUIglobals' TclRequire : onDestroy: no visible binding for global variable '.limmaGUIglobals' TclRequire : onOK: no visible binding for global variable '.limmaGUIglobals' TclRequire : onOK: no visible binding for global variable 'limmaGUIenvironment' UpdateSpotTypesStatus: no visible binding for global variable 'limmaGUIenvironment' UpDownOrBoth: no visible binding for global variable '.limmaGUIglobals' UpDownOrBoth : onOK: no visible binding for global variable '.limmaGUIglobals' UpDownOrBoth : <anonymous>: no visible binding for global variable '.limmaGUIglobals' VennDiagramPlot: no visible binding for global variable 'limmaGUIenvironment' VennDiagramPlot: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixAsPairs: no visible binding for global variable 'limmaGUIenvironment' ViewDesignOrContrastsMatrixAsPairs: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixAsPairs : onOK: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixAsPairs : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixInTable: no visible binding for global variable 'limmaGUIenvironment' ViewDesignOrContrastsMatrixInTable: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixInTable : onClose: no visible binding for global variable '.limmaGUIglobals' ViewDesignOrContrastsMatrixInTable : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ViewExistingContrastsParameterization: no visible binding for global variable 'limmaGUIenvironment' ViewExistingContrastsParameterization: no visible binding for global variable '.limmaGUIglobals' ViewExistingParameterization: no visible binding for global variable 'limmaGUIenvironment' ViewExistingParameterization: no visible binding for global variable '.limmaGUIglobals' ViewRNATargets: no visible binding for global variable 'limmaGUIenvironment' ViewRNATargets: no visible binding for global variable '.limmaGUIglobals' ViewRNATargets : onClose: no visible binding for global variable '.limmaGUIglobals' ViewRNATargets : <anonymous>: no visible binding for global variable '.limmaGUIglobals' ViewSpotTypes: no visible binding for global variable 'limmaGUIenvironment' ViewSpotTypes: no visible binding for global variable '.limmaGUIglobals' ViewSpotTypes : onUpdate: no visible binding for global variable 'limmaGUIenvironment' ViewSpotTypes : onUpdate: no visible binding for global variable '.limmaGUIglobals' ViewSpotTypes : onClose: no visible binding for global variable '.limmaGUIglobals' ViewSpotTypes : <anonymous>: no visible binding for global variable '.limmaGUIglobals' WithinBetweenOrBoth: no visible binding for global variable '.limmaGUIglobals' WithinBetweenOrBoth : onOK: no visible binding for global variable '.limmaGUIglobals' WithinBetweenOrBoth : <anonymous>: no visible binding for global variable '.limmaGUIglobals' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating limmaGUI-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating limmaGUI-manual.tex ... OK * checking limmaGUI-manual.tex ... OK
limmaGUI.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/limmaGUI.Rcheck ---------- Making package limmaGUI ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing man source files installing indices installing help Note: unmatched right brace in 'limmaGUI' on or after line 139 Note: unmatched right brace in 'limmaGUI.Rd' on or after line 139 >>> Building/Updating help pages for package 'limmaGUI' Formats: text html latex example chm LGchangelog text html latex chm limmaGUI text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\limmaGUI.Rcheck\00_pkg_src\limmaGUI\chm\limmaGUI.chm Compile time: 0 minutes, 0 seconds 3 Topics 137 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\limmaGUI.Rcheck\00_pkg_src\limmaGUI\chm\limmaGUI.chm, 26,541 bytes Compression decreased file by 36,972 bytes. preparing package limmaGUI for lazy loading Loading required package: limma Loading required package: tcltk Loading Tcl/Tk interface ... done adding MD5 sums * DONE (limmaGUI)