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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 118/247HostnameOSArchBUILDCHECKBUILD BIN

keggorth

0.0-4

VJ Carey
Last Changed Date: 2007-07-11 11:33:52 -0700
Last Changed Rev: 25745
lamb1 Linux (SUSE 10.1) x86_64  OK [ OK ]
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: keggorth
Version: 0.0-4
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check keggorth_0.0-4.tar.gz
RetCode: 0
Time: 29.6 seconds
Status: OK
CheckDir: keggorth.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/keggorth.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'keggorth/DESCRIPTION' ... OK
* this is package 'keggorth' version '0.0-4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'keggorth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getKOprobes: no visible binding for global variable 'KOgraph'
getKOtags: no visible binding for global variable 'KOgraph'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating keggorth-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating keggorth-manual.tex ... OK
* checking keggorth-manual.tex ... OK

keggorth.Rcheck/00install.out:

* Installing *source* package 'keggorth' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'keggorth'
     Formats: text html latex example 
  getKOprobes                       text    html    latex   example
  keggDF2graph                      text    html    latex   example
** building package indices ...
* DONE (keggorth)