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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 114/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
idiogram1.11.3Karl J. DykemaLast Changed Date: 2007-08-16 12:39:48 -0700 Last Changed Rev: 26458 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | [ WARNINGS ] | OK |
Package: idiogram |
Version: 1.11.3 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check idiogram_1.11.3.tar.gz |
RetCode: 0 |
Time: 76.8 seconds |
Status: WARNINGS |
CheckDir: idiogram.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-10 r42465) * checking for file 'idiogram/DESCRIPTION' ... OK * this is package 'idiogram' version '1.11.3' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'idiogram' can be installed ... WARNING Found the following significant warnings: Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it See '/Users/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating idiogram-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating idiogram-manual.tex ... OK * checking idiogram-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/bbs-2.1-bioc/meat/idiogram.Rcheck/00check.log for details
idiogram.Rcheck/00install.out:
* Installing *source* package 'idiogram' ... ** R ** data ** moving datasets to lazyload DB Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'vai.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'ucsf.chr' looks like a pre-2.4.0 S4 object: please recreate it Warning: 'colo.eset' looks like a pre-2.4.0 S4 object: please recreate it ** inst ** help >>> Building/Updating help pages for package 'idiogram' Formats: text html latex example Hs.cytoband text html latex example buildChromLocation.2 text html latex example cytoband text html latex example idiograb text html latex example idiogram text html latex example idiogramExample text html latex example ** building package indices ... * DONE (idiogram)