Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 99/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
globaltest4.7.3Jelle GoemanLast Changed Date: 2007-08-17 05:05:49 -0700 Last Changed Rev: 26474 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
wellington | Linux (SUSE 9.2) | i686 | [ ERROR ] | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: globaltest |
Version: 4.7.3 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build globaltest |
RetCode: 1 |
Time: 179.9 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'globaltest/DESCRIPTION' ... OK * preparing 'globaltest': * checking DESCRIPTION meta-information ... OK * installing the package to re-build vignettes * Installing *source* package 'globaltest' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: multtest Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: survival Loading required package: splines Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: annotate New generic for "combine" does not agree with implicit generic from package "Biobase"; a new generic will be assigned with package "globaltest" Creating a new generic function for "fitted.values" in "globaltest" Creating a new generic function for "residuals" in "globaltest" ** help >>> Building/Updating help pages for package 'globaltest' Formats: text html latex example GOstructure text html latex annotation.vandeVijver text html latex checkerboard text html latex example geneplot text html latex example globaltest text html latex example gostructure.vandeVijver text html latex gt.barplot-class text html latex gt.result-class text html latex gtGO text html latex example mlogit text html latex example multtest text html latex example permutations text html latex example regressionplot text html latex example sampleplot text html latex example sampling text html latex example vandeVijver text html latex ** building package indices ... * DONE (globaltest) * creating vignettes ... ERROR Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: multtest Loading required package: survival Loading required package: splines Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: annotate Loading required package: GO Loading required package: graph Loading required package: GO.db Attaching package: 'GO.db' The following object(s) are masked from package:GO : GOBPANCESTOR, GOBPCHILDREN, GOBPOFFSPRING, GOBPPARENTS, GOCCANCESTOR, GOCCCHILDREN, GOCCOFFSPRING, GOCCPARENTS, GOMAPCOUNTS, GOMFANCESTOR, GOMFCHILDREN, GOMFOFFSPRING, GOMFPARENTS, GOOBSOLETE, GOSYNONYM, GOTERM Loading required package: RBGL Loading required package: Category Loading required package: genefilter Attaching package: 'Rgraphviz' The following object(s) are masked from package:annotate : toFile Error: processing vignette 'GlobalTest.Rnw' failed with diagnostics: chunk 33 (label=visualizeGO) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "Term", for signature "character" In addition: Warning message: Multiple methods lists found for 'combine' Execution halted