Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 75/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
flowCore1.2.0Nolwenn Le MeurLast Changed Date: 2007-08-19 14:03:48 -0700 Last Changed Rev: 26510 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: flowCore |
Version: 1.2.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check flowCore_1.2.0.tar.gz |
RetCode: 0 |
Time: 106.0 seconds |
Status: WARNINGS |
CheckDir: flowCore.Rcheck |
Warnings: 2 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/flowCore.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'flowCore/DESCRIPTION' ... OK * this is package 'flowCore' version '1.2.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'flowCore' can be installed ... WARNING Found the following significant warnings: Warning: argument in method definition changed from (e1) to (x) See 'E:/biocbld/bbs-2.1-bioc/meat/flowCore.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented S4 methods: generic 'split' and siglist 'flowFrame,filter,ANY' generic 'split' and siglist 'flowFrame,logicalFilterResult,ANY' generic 'split' and siglist 'flowFrame,multipleFilterResult,ANY' generic 'split' and siglist 'flowSet,ANY,ANY' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating flowCore-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating flowCore-manual.tex ... OK * checking flowCore-manual.tex ... OK WARNING: There were 2 warnings, see E:/biocbld/bbs-2.1-bioc/meat/flowCore.Rcheck/00check.log for details
flowCore.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/flowCore.Rcheck ---------- Making package flowCore ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making biexponential.d from biexponential.c making inPolygon.d from inPolygon.c gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c biexponential.c -o biexponential.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c inPolygon.c -o inPolygon.o windres -I e:/biocbld/bbs-2.1-bioc/R/include -i flowCore_res.rc -o flowCore_res.o gcc -shared -s -o flowCore.dll flowCore.def biexponential.o inPolygon.o flowCore_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'flowCore' Formats: text html latex example chm GvHD text html latex chm KmeansFilter text html latex example chm Subset-methods text html latex example chm arcsinhTransform text html latex example chm biexponentialTransform text html latex example chm coerce text html latex example chm compensate text html latex example chm each_col text html latex example chm ellipsoidGate text html latex example chm filter-and-methods text html latex chm filter-class text html latex chm filter-in-methods text html latex example chm filter-on-methods text html latex example chm filter text html latex example chm filterDetails-methods text html latex chm filterResult-class text html latex example chm flowFrame-class text html latex chm flowSet-class text html latex example chm fsApply text html latex example chm identifier text html latex example chm keyword-methods text html latex example chm linearTransform text html latex example chm lnTransform text html latex example chm logTransform text html latex example chm logicalFilterResult-class text html latex example chm logicleTransform text html latex example chm multiFilter-class text html latex example chm multipleFilterResult-class text html latex example chm norm2Filter-class text html latex example chm parameters text html latex example chm print.filterSummary text html latex example chm quadraticTransform text html latex example chm randomFilterResult-class text html latex example chm read.FCS text html latex example chm read.FCSheader text html latex example chm read.flowSet text html latex example chm rectangleGate text html latex example chm sampleFilter-class text html latex example chm scaleTransform text html latex example chm setOperationFilter-class text html latex example chm spillover-flowSet text html latex chm splitScaleTransform text html latex example chm transform-class text html latex example chm transformFilter-class text html latex example chm transformList-class text html latex example chm transformMap-class text html latex example chm truncateTransform text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\flowCore.Rcheck\00_pkg_src\flowCore\chm\flowCore.chm Compile time: 0 minutes, 1 second 48 Topics 399 Local links 2 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\flowCore.Rcheck\00_pkg_src\flowCore\chm\flowCore.chm, 75,971 bytes Compression decreased file by 141,938 bytes. preparing package flowCore for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: rrcov KernSmooth 2.22 installed Copyright M. P. Wand 1997 Warning: argument in method definition changed from (e1) to (x) Creating a new generic function for "colnames" in "flowCore" Creating a new generic function for "colnames<-" in "flowCore" Creating a new generic function for "nrow" in "flowCore" Creating a new generic function for "ncol" in "flowCore" adding MD5 sums * DONE (flowCore)