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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 73/247HostnameOSArchBUILDCHECKBUILD BIN

fbat

1.1.2

Weiliang Qiu
Last Changed Date: 2007-06-13 10:17:56 -0700
Last Changed Rev: 25352
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  WARNINGS [ OK ]
Package: fbat
Version: 1.1.2
Command: /Users/biocbuild/BBS/utils/build-universal.sh fbat_1.1.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fbat.buildbin-libdir
RetCode: 0
Time: 10.6 seconds
Status: OK
PackageFile: fbat_1.1.2.tgz

Command output

                    INSTALLATION WITH 'R CMD INSTALL fbat_1.1.2.tar.gz'

* Installing to library 'fbat.buildbin-libdir'
* Installing *source* package 'fbat' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c FBAT.c -o FBAT.o
FBAT.c: In function 'checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex1' may be used uninitialized in this function
FBAT.c:1667: warning: 'sex2' may be used uninitialized in this function
FBAT.c: In function 'checkdecomposePed':
FBAT.c:1590: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkCompatible':
FBAT.c:1404: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'oneNuclearFamily':
FBAT.c:1859: warning: 'sex1' may be used uninitialized in this function
FBAT.c:1859: warning: 'sex2' may be used uninitialized in this function
FBAT.c: In function 'decomposePed':
FBAT.c:1986: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'fbat':
FBAT.c:43: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'countLines':
FBAT.c:2142: warning: 'tmpnc2' may be used uninitialized in this function
gfortran-4.0 -arch i386  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -march=nocona -c missGFreq.f -o missGFreq.o
Warning: Nonconforming tab character in column 1 of line 1
Warning: Nonconforming tab character in column 1 of line 4
Warning: Nonconforming tab character in column 1 of line 5
Warning: Nonconforming tab character in column 1 of line 6
Warning: Nonconforming tab character in column 1 of line 9
Warning: Nonconforming tab character in column 1 of line 13
Warning: Nonconforming tab character in column 1 of line 48
Warning: Nonconforming tab character in column 1 of line 49
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -Wall -std=gnu99 -march=nocona -c register.c -o register.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o  -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.1 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c FBAT.c -o FBAT.o
FBAT.c: In function 'checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex1' may be used uninitialized in this function
FBAT.c:1667: warning: 'sex2' may be used uninitialized in this function
FBAT.c: In function 'checkdecomposePed':
FBAT.c:1590: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkCompatible':
FBAT.c:1404: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'oneNuclearFamily':
FBAT.c:1859: warning: 'sex1' may be used uninitialized in this function
FBAT.c:1859: warning: 'sex2' may be used uninitialized in this function
FBAT.c: In function 'decomposePed':
FBAT.c:1986: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'fbat':
FBAT.c:43: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'countLines':
FBAT.c:2142: warning: 'tmpnc2' may be used uninitialized in this function
gfortran-4.0 -arch ppc  -isysroot /Developer/SDKs/MacOSX10.4u.sdk   -fPIC  -g -O2 -Wall -c missGFreq.f -o missGFreq.o
Warning: Nonconforming tab character in column 1 of line 1
Warning: Nonconforming tab character in column 1 of line 4
Warning: Nonconforming tab character in column 1 of line 5
Warning: Nonconforming tab character in column 1 of line 6
Warning: Nonconforming tab character in column 1 of line 9
Warning: Nonconforming tab character in column 1 of line 13
Warning: Nonconforming tab character in column 1 of line 48
Warning: Nonconforming tab character in column 1 of line 49
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c register.c -o register.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o  -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.1 -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
WARNING: true value of 'SaveImage' is deprecated in favour of 'LazyLoad: true'
** save image
Loading required package: MASS
Loading required package: GeneticsBase
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
** help
Note: unmatched right brace in 'getFounders' on or after line 6
 >>> Building/Updating help pages for package 'fbat'
     Formats: text html latex example 
  checkMarkers                      text    html    latex   example
  checkMendelian                    text    html    latex   example
  fbat                              text    html    latex   example
  getFounders                       text    html    latex   example
  missGFreq                         text    html    latex   example
  pedAFreq                          text    html    latex   example
  pedFlagHomo                       text    html    latex   example
  pedGFreq                          text    html    latex   example
  pedHardyWeinberg                  text    html    latex   example
  readHapMap                        text    html    latex   example
  readLink                          text    html    latex   example
  readPed                           text    html    latex   example
  sampleInfoCEU                     text    html    latex   example
  sampleInfoCHB                     text    html    latex   example
  sampleInfoJPT                     text    html    latex   example
  sampleInfoYRI                     text    html    latex   example
  summaryPvalue                     text    html    latex   example
  viewFlagHomo                      text    html    latex   example
  viewHW                            text    html    latex   example
  viewstat                          text    html    latex   example
** building package indices ...
* DONE (fbat)