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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 58/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
cosmoGUI1.3.0Oliver BembomLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | [ OK ] | OK |
Package: cosmoGUI |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check cosmoGUI_1.3.0.tar.gz |
RetCode: 0 |
Time: 38.4 seconds |
Status: OK |
CheckDir: cosmoGUI.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/cosmoGUI.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-10 r42465) * checking for file 'cosmoGUI/DESCRIPTION' ... OK * this is package 'cosmoGUI' version '1.3.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'cosmoGUI' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET' advancedBuild: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' constraintBuilder: no visible binding for global variable 'COSMO.CONSTRAINTS' constraintBuilder: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET' sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' sampleICBound: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' sampleICStep: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' subMotif: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating cosmoGUI-Ex.R ... OK * checking examples ... OK * creating cosmoGUI-manual.tex ... OK * checking cosmoGUI-manual.tex ... OK
cosmoGUI.Rcheck/00install.out:
* Installing *source* package 'cosmoGUI' ... ** R ** preparing package for lazy loading Loading required package: tkWidgets Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: cosmo Loading required package: seqLogo Loading required package: grid Welcome to cosmo version 1.3.0 cosmo is free for research purposes only. For more details, type license.cosmo(). Type citation('cosmo') for details on how to cite cosmo in publications. ** help >>> Building/Updating help pages for package 'cosmoGUI' Formats: text html latex example constraintBuilder text html latex example ** building package indices ... * DONE (cosmoGUI)