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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 49/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
cghMCR1.7.2J. ZhangLast Changed Date: 2007-07-27 12:41:22 -0700 Last Changed Rev: 26004 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: cghMCR |
Version: 1.7.2 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check cghMCR_1.7.2.tar.gz |
RetCode: 0 |
Time: 189.0 seconds |
Status: WARNINGS |
CheckDir: cghMCR.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/cghMCR.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'cghMCR/DESCRIPTION' ... OK * this is package 'cghMCR' version '1.7.2' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'cghMCR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'cghMCR': cghMCR Code: function(segments, gapAllowed = 500, alteredLow = 0.03, alteredHigh = 0.97, spanLimit = 2e+07, recurrence = 75, thresholdType = c("quantile", "value")) Docs: function(segments, gapAllowed = 500, alteredLow = 0.03, alteredHigh = 0.97, spanLimit = 2e+07, recurrence = 75) Argument names in code not in docs: thresholdType * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating cghMCR-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating cghMCR-manual.tex ... OK * checking cghMCR-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/cghMCR.Rcheck/00check.log for details
cghMCR.Rcheck/00install.out:
* Installing *source* package 'cghMCR' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: DNAcopy Loading required package: marray Loading required package: limma Loading required package: arrayQuality Loading required package: convert Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: hexbin Loading required package: grid Loading required package: lattice Loading required package: gridBase Loading required package: RColorBrewer Warning in namespaceImportFrom(self, asNamespace(ns)) : replacing previous import: summary Creating a new generic function for "print" in "cghMCR" ** help >>> Building/Updating help pages for package 'cghMCR' Formats: text html latex example cghMCR-class text html latex example cghMCR text html latex example mergeMCRProbes text html latex example plot.DNAcopy text html latex example ** building package indices ... * DONE (cghMCR)