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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 40/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
bridge1.9.0Raphael GottardoLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: bridge |
Version: 1.9.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check bridge_1.9.0.tar.gz |
RetCode: 0 |
Time: 109.2 seconds |
Status: OK |
CheckDir: bridge.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/bridge.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'bridge/DESCRIPTION' ... OK * this is package 'bridge' version '1.9.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'bridge' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating bridge-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating bridge-manual.tex ... OK * checking bridge-manual.tex ... OK
bridge.Rcheck/00install.out:
* Installing *source* package 'bridge' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c bridge2.affy.c -o bridge2.affy.o bridge2.affy.c: In function `gene_express_2s': bridge2.affy.c:36: warning: unused variable `old_model' bridge2.affy.c:37: warning: unused variable `count_model' bridge2.affy.c: In function `up_date_w2': bridge2.affy.c:300: warning: implicit declaration of function `dirichlet' bridge2.affy.c:280: warning: unused variable `w_new' gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c bridge2.c -o bridge2.o bridge2.c: In function `mcmc': bridge2.c:138: warning: unused variable `rho_new' bridge2.c:142: warning: unused variable `sum_rho' bridge2.c:142: warning: unused variable `sum_rho_new' bridge2.c:143: warning: unused variable `dens_rho' bridge2.c:143: warning: unused variable `dens_rho_new' bridge2.c:145: warning: unused variable `pi' bridge2.c:154: warning: unused variable `dens_t' bridge2.c:154: warning: unused variable `dens_t_new' bridge2.c:159: warning: unused variable `post_mean_mu' bridge2.c:159: warning: unused variable `post_prec_mu' bridge2.c:160: warning: unused variable `post_mean_beta' bridge2.c:160: warning: unused variable `post_prec_beta' bridge2.c:161: warning: unused variable `post_mean_alpha' bridge2.c:161: warning: unused variable `post_prec_alpha' bridge2.c:162: warning: unused variable `post_mean_delta' bridge2.c:162: warning: unused variable `post_prec_delta' bridge2.c:163: warning: unused variable `post_mean_eta' bridge2.c:163: warning: unused variable `post_prec_eta' bridge2.c:165: warning: unused variable `l_ab' bridge2.c:165: warning: unused variable `l_ab_new' bridge2.c:166: warning: unused variable `a_eps_new' bridge2.c:166: warning: unused variable `b_eps_new' bridge2.c:171: warning: unused variable `countrho' bridge2.c:173: warning: unused variable `counta' bridge2.c:174: warning: unused variable `counta_eps' bridge2.c:175: warning: unused variable `countb_eps' bridge2.c:177: warning: unused variable `countp' bridge2.c:191: warning: unused variable `sum_res1' bridge2.c:192: warning: unused variable `sum_res2' bridge2.c:198: warning: unused variable `old_b' bridge2.c:198: warning: unused variable `width_b' bridge2.c:199: warning: unused variable `old_a' bridge2.c:199: warning: unused variable `width_a' gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c bridge2_util.c -o bridge2_util.o bridge2_util.c: In function `qr_solve': bridge2_util.c:570: warning: implicit declaration of function `dqrdc2_' bridge2_util.c:585: warning: implicit declaration of function `dqrcf_' bridge2_util.c:549: warning: unused variable `vmax' bridge2_util.c: In function `inverse': bridge2_util.c:608: warning: unused variable `j' bridge2_util.c: In function `product_mat_vec': bridge2_util.c:655: warning: unused variable `k' bridge2_util.c: In function `slice_sampling_b': bridge2_util.c:763: warning: suggest parentheses around comparison in operand of & bridge2_util.c:771: warning: suggest parentheses around comparison in operand of & bridge2_util.c: In function `slice_sampling_a': bridge2_util.c:818: warning: suggest parentheses around comparison in operand of & bridge2_util.c:826: warning: suggest parentheses around comparison in operand of & bridge2_util.c: In function `slice_sampling_rho': bridge2_util.c:875: warning: suggest parentheses around comparison in operand of & bridge2_util.c:884: warning: suggest parentheses around comparison in operand of & bridge2_util.c: In function `slice_sampling_p': bridge2_util.c:961: warning: suggest parentheses around comparison in operand of & bridge2_util.c:969: warning: suggest parentheses around comparison in operand of & gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c bridge3.c -o bridge3.o bridge3.c: In function `gene_express_3s': bridge3.c:38: warning: unused variable `old_model' bridge3.c:39: warning: unused variable `count_model' bridge3.c: In function `gibbs_mu': bridge3.c:335: warning: suggest parentheses around comparison in operand of & bridge3.c: In function `up_date_w': bridge3.c:365: warning: unused variable `w_new' gcc -std=gnu99 -shared -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** help >>> Building/Updating help pages for package 'bridge' Formats: text html latex example bridge.2samples text html latex example bridge.3samples text html latex example hiv text html latex ** building package indices ... * DONE (bridge)