Back to the "Multiple platform build/check report"

IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 27/247HostnameOSArchBUILDCHECKBUILD BIN

arrayQualityMetrics

1.0.17

Audrey Kauffmann
Last Changed Date: 2007-08-19 06:20:07 -0700
Last Changed Rev: 26504
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK [ WARNINGS ] OK 
Package: arrayQualityMetrics
Version: 1.0.17
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check arrayQualityMetrics_1.0.17.tar.gz
RetCode: 0
Time: 273.8 seconds
Status: WARNINGS
CheckDir: arrayQualityMetrics.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-10 r42465)
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '1.0.17'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makePlot: no visible global function definition for 'devDims'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'arrayQualityMetrics' and siglist 'NChannelSet'
  generic 'arrayQualityMetrics' and siglist 'ExpressionSet'
  generic 'arrayQualityMetrics' and siglist 'AffyBatch'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating arrayQualityMetrics-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating arrayQualityMetrics-manual.tex ... OK
* checking arrayQualityMetrics-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.1-bioc/meat/arrayQualityMetrics.Rcheck/00check.log
for details

arrayQualityMetrics.Rcheck/00install.out:

* Installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: simpleaffy
Loading required package: CCl4
Loading required package: limma
** help
 >>> Building/Updating help pages for package 'arrayQualityMetrics'
     Formats: text html latex example 
  arrayQualityMetrics               text    html    latex   example
** building package indices ...
* DONE (arrayQualityMetrics)