Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 24/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
arrayMagic1.15.0Andreas BunessLast Changed Date: 2007-07-14 03:35:03 -0700 Last Changed Rev: 25817 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: arrayMagic |
Version: 1.15.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check arrayMagic_1.15.0.tar.gz |
RetCode: 0 |
Time: 216.1 seconds |
Status: OK |
CheckDir: arrayMagic.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/arrayMagic.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'arrayMagic/DESCRIPTION' ... OK * this is package 'arrayMagic' version '1.15.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'arrayMagic' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.imageMatrix': plot.imageMatrix The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * creating arrayMagic-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating arrayMagic-manual.tex ... OK * checking arrayMagic-manual.tex ... OK
arrayMagic.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/arrayMagic.Rcheck ---------- Making package arrayMagic ------------ adding build stamp to DESCRIPTION installing R files installing inst files preparing package arrayMagic for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: vsn Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: limma Loading required package: genefilter Loading required package: survival Loading required package: splines installing man source files installing indices installing help Note: unmatched right brace in 'readpDataSlides' on or after line 63 Note: unmatched right brace in 'readpDataSlides.Rd' on or after line 63 >>> Building/Updating help pages for package 'arrayMagic' Formats: text html latex example chm arrayData-class text html latex example chm cbind.arrayData text html latex example chm cbind.exprSetRG text html latex example chm colCors text html latex example chm controlledApply text html latex example chm controlledSubsetting text html latex example chm detectReplicas text html latex example chm exprSetRG-class text html latex example chm fdc text html latex example chm interweave text html latex example chm normalise text html latex example chm plot.imageMatrix text html latex example chm plotDistributions text html latex example chm processArrayData text html latex example chm processArrayDataObject text html latex example chm qualityDiagnostics text html latex example chm qualityParameters text html latex example chm readIntensities text html latex example chm readpDataSlides text html latex example chm removeSpots text html latex example chm simpleApply text html latex example chm slideMerge text html latex example chm spatialLayout text html latex example chm spotMerge text html latex example chm visualiseHybridisations text html latex example chm visualiseQualityParameters text html latex example chm write.htmltable text html latex example chm writeToFile text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\arrayMagic.Rcheck\00_pkg_src\arrayMagic\chm\arrayMagic.chm Compile time: 0 minutes, 1 second 29 Topics 247 Local links 1 Internet link 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\arrayMagic.Rcheck\00_pkg_src\arrayMagic\chm\arrayMagic.chm, 71,849 bytes Compression decreased file by 101,840 bytes. adding MD5 sums * DONE (arrayMagic)