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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 22/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
arji0.3.16Vince CareyLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ OK ] | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: arji |
Version: 0.3.16 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build arji |
RetCode: 0 |
Time: 4.5 seconds |
Status: OK |
PackageFile: arji_0.3.16.tar.gz |
* checking for file 'arji/DESCRIPTION' ... OK * preparing 'arji': * checking DESCRIPTION meta-information ... OK * cleaning src Makefile:1: Makevars: No such file or directory make: *** No rule to make target `Makevars'. Stop. * installing the package to re-build vignettes * Installing *source* package 'arji' ... configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - /usr/lib64/jvm/java/bin/javac ../inst/java/*.java /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD SHLIB arji.c make[1]: Entering directory `/home/biocbuild/bbs-2.1-bioc/meat/arji/src' gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include -fpic -g -O2 -Wall -c arji.c -o arji.o arji.c: In function 'arji_destroyJavaVM': arji.c:144: warning: unused variable 'kill' arji.c: In function 'arji_getJavaClass': arji.c:168: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c:163: warning: unused variable 'jstr' arji.c:162: warning: unused variable 'args' arji.c:161: warning: unused variable 'stringClass' arji.c:160: warning: unused variable 'mid' arji.c: In function 'arji_getJavaStaticMethodID': arji.c:194: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c: In function 'arji_getJavaNonstaticMethodID': arji.c:223: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c: In function 'arji_getJavaStaticFieldID': arji.c:252: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c: In function 'arji_getJavaFieldID': arji.c:287: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c: In function 'arji_createJVM': arji.c:332: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c:316: warning: unused variable 'outenv' arji.c:316: warning: unused variable 'JVMRef' arji.c:316: warning: unused variable 'JNIenvRef' arji.c: In function 'arji_callJNIArgable': arji.c:392: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c:622: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'jobject' arji.c:623: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'struct _jobject **' arji.c: In function 'arji_getJavaStaticField': arji.c:684: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c: In function 'arji_getJavaField': arji.c:853: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c:844: warning: unused variable 'cls' arji.c: In function 'convertJavaString': arji.c:1027: warning: dereferencing type-punned pointer will break strict-aliasing rules arji.c:1018: warning: unused variable 'result' arji.c:1017: warning: unused variable 'mid' arji.c:1016: warning: unused variable 'cls' arji.c: In function 'convertJavaObject': arji.c:1061: warning: format '%x' expects type 'unsigned int', but argument 2 has type 'struct _jobject **' arji.c:1069: warning: control reaches end of non-void function arji.c: In function 'arji_getJavaField': arji.c:1007: warning: control reaches end of non-void function arji.c: In function 'arji_getJavaStaticField': arji.c:838: warning: control reaches end of non-void function arji.c: At top level: arji.c:66: warning: 'JavaMethod_type_tag' defined but not used arji.c: In function 'arji_callJNIArgable': arji.c:357: warning: 'obj' may be used uninitialized in this function gcc -std=gnu99 -shared -L/usr/local/lib64 -o arji.so arji.o -L/usr/lib64/jvm/java/jre/lib/amd64 -L/usr/lib64/jvm/java/jre/lib/i386 -ljava -L/usr/lib64/jvm/java/jre/lib/amd64/server -L/usr/lib64/jvm/java/jre/lib/i386/client -ljvm -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR make[1]: Leaving directory `/home/biocbuild/bbs-2.1-bioc/meat/arji/src' ** R ** inst ** help >>> Building/Updating help pages for package 'arji' Formats: text html latex example JavaVMRef-class text html latex example createJVM text html latex example reflect text html latex example ** building package indices ... * DONE (arji) * creating vignettes ... OK * cleaning src echo "nothing to clean" nothing to clean * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'arji_0.3.16.tar.gz'