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annotate

1.15.6

Biocore Team c/o BioC user list
Last Changed Date: 2007-08-20 09:33:20 -0700
Last Changed Rev: 26527
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK [ OK ]
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: annotate
Version: 1.15.6
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=annotate.buildbin-libdir annotate_1.15.6.tar.gz
RetCode: 0
Time: 27.9 seconds
Status: OK
PackageFile: annotate_1.15.6.zip

Command output

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/annotate.buildbin-libdir

Using auto-selected zip options 'annotate-ZIPDATA=zip annotate-HELP=ziponly'

---------- Making package annotate ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package annotate for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'dropECode' on or after line 44
Note: unmatched right brace in 'dropECode.Rd' on or after line 44
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Note: unmatched right brace in 'getOntology' on or after line 38
Note: unmatched right brace in 'getOntology.Rd' on or after line 38
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
  ACCNUMStats                       text    html    latex   example chm
  GO2heatmap                        text    html    latex   example chm
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  filterGOByOntology                text    html    latex   example chm
  findNeighbors                     text    html    latex   example chm
  genbank                           text    html    latex   example chm
  genelocator                       text    html    latex   example chm
  getAnnMap                         text    html    latex   example chm
  getEvidence                       text    html    latex   example chm
  getGOTerm                         text    html    latex   example chm
  getOntology                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
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  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
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  readGEOAnn                        text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
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  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4504\annotate\chm\annotate.chm





Compile time: 0 minutes, 1 second

58	Topics

302	Local links

6	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4504\annotate\chm\annotate.chm, 91,687 bytes

Compression decreased file by 136,798 bytes.

  adding MD5 sums

packaged installation of package 'annotate' as annotate_1.15.6.zip
* DONE (annotate)