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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 2/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
aCGH1.11.0Jane FridlyandLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | [ OK ] | WARNINGS | OK |
Package: aCGH |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build aCGH |
RetCode: 0 |
Time: 70.3 seconds |
Status: OK |
PackageFile: aCGH_1.11.0.tar.gz |
* checking for file 'aCGH/DESCRIPTION' ... OK * preparing 'aCGH': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes * Installing *source* package 'aCGH' ... ** libs ** arch - i386 g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -g3 -msse3 -fPIC -g -O2 -Wall -march=nocona -c hmm.cpp -o hmm.o g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o aCGH.so hmm.o -lm -F/Library/Frameworks/R.framework/.. -framework R ** arch - ppc g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -g3 -I/usr/local/include -fPIC -g -O2 -Wall -c hmm.cpp -o hmm.o g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o aCGH.so hmm.o -lm -F/Library/Frameworks/R.framework/.. -framework R ** R ** data ** demo ** inst ** preparing package for lazy loading Loading required package: cluster Loading required package: survival Loading required package: splines Loading required package: multtest Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: sma ** help Note: unmatched right brace in 'aCGH.process' on or after line 28 >>> Building/Updating help pages for package 'aCGH' Formats: text html latex example aCGH text html latex example aCGH.process text html latex example aCGH.read.Sprocs text html latex example aCGH.test text html latex example clusterGenome text html latex example colorectal text html latex example computeSD.func text html latex fga.func text html latex example find.genomic.events text html latex find.hmm.states text html latex example findAber.func text html latex findAmplif.func text html latex findOutliers.func text html latex findTrans.func text html latex gainLoss text html latex example heatmap text html latex example human.chrom.info.Jul03 text html latex human.chrom.info.May04 text html latex impute.HMM text html latex example impute.lowess text html latex example mergeFunc text html latex mergeLevels text html latex example plotFreqStat text html latex example plotGenome text html latex example plotHmmStates text html latex example plotSummaryProfile text html latex example states.hmm.func text html latex summarize.clones text html latex example threshold.func text html latex example ** building package indices ... * DONE (aCGH) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'aCGH_1.11.0.tar.gz'