Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 226/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SNPchip1.1.22Robert ScharpfLast Changed Date: 2007-08-17 10:17:52 -0700 Last Changed Rev: 26478 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: SNPchip |
Version: 1.1.22 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SNPchip_1.1.22.tar.gz |
RetCode: 0 |
Time: 93.7 seconds |
Status: OK |
CheckDir: SNPchip.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/SNPchip.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'SNPchip/DESCRIPTION' ... OK * this is package 'SNPchip' version '1.1.22' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SNPchip' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .drawCentromere: no visible binding for global variable 'chromosomeAnnotation' .getXlim: no visible binding for global variable 'chromosomeAnnotation' centromere: no visible binding for global variable 'chromosomeAnnotation' chromosomeSize: no visible binding for global variable 'chromosomeAnnotation' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating SNPchip-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SNPchip-manual.tex ... OK * checking SNPchip-manual.tex ... OK
SNPchip.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/SNPchip.Rcheck ---------- Making package SNPchip ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing data files preparing package SNPchip for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Creating a new generic function for "summary" in "SNPchip" installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'SNPchip' Formats: text html latex example chm DEPRECATED-classes text html latex chm ParESet-class text html latex example chm ParSnpCallSet-class text html latex example chm ParSnpCopyNumberSet-class text html latex example chm ParSnpSet-class text html latex example chm addFeatureData-method text html latex chm allPlots-methods text html latex chm alleleA text html latex example chm alleleB text html latex example chm calculateCopyNumber text html latex chm centromere text html latex example chm chromosome text html latex chm chromosomeAnnotation text html latex example chm chromosomeSize text html latex example chm classes text html latex chm coerce-methods text html latex chm cytoband text html latex example chm dbSnpId text html latex example chm enzyme text html latex example chm fragmentLength text html latex example chm getPar-methods text html latex chm getSnpAnnotation text html latex example chm hapmap text html latex example chm initialize-methods text html latex chm oligoSnpSet-class text html latex chm plotCytoband text html latex example chm plotSnp text html latex example chm position text html latex chm sample.snpset text html latex example chm selectSomeIndex text html latex example chm show-methods text html latex chm showSummary text html latex example chm smoothSnp text html latex example chm snpPar text html latex example chm summary-methods text html latex chm unsplitSnpSet text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm Compile time: 0 minutes, 0 seconds 37 Topics 137 Local links 1 Internet link 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\SNPchip.Rcheck\00_pkg_src\SNPchip\chm\SNPchip.chm, 37,790 bytes Compression decreased file by 60,147 bytes. adding MD5 sums * DONE (SNPchip)